Entering edit mode
Christelle Dantec
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20
@christelle-dantec-1756
Last seen 10.3 years ago
Hi,
I have a technical replicates with dye-swap as:
Cy3 Cy5
-------------
wt1 mu1
mu1 wt1
wt2 mu2
mu2 wt2
wt3 mu3
mu3 wt3
wt4 mu4
mu4 wt4
designM <- c(1,-1,1,-1,1,-1,1,-1)
corfit<- duplicateCorrelation(MAlist, designM,
bloc=c(1,1,2,2,3,3,4,4))
fit<- lmFit(MAlist,design=designM,block=c(1,1,2,2,3,3,4,4),
correlation=corfit$consensus)
but I have this error message:
Running plug-in: normalization.R
Warning in Too much damping - convergence tolerance not achievable
Error in paste(errMsg, "\n", sep = "") : argument "errMsg" is missing,
with no default
Execution halted
Failed to execute R-script
This error appears when creating the corfit variable.
If someone can help me...
Thanks
Christelle
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Passerelle antivirus IGF
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