An embedded and charset-unspecified text was scrubbed... Name: not available Url: https://stat.ethz.ch/pipermail/bioconductor/attachments/20060824/ 590723b7/attachment.pl

Sung-Chur Sim wrote: > Dear All: > > I am a new user of Bioconductor and have been trying to create my own > CDF environment using the "makecdfenv" package. After I ran > "R>make.cdf.env (my.CDF file)", it seems that the CDF environment was > created. However, when I proceed to further analysis such as the > functions in "affy" library, I got an error message as follows: > > R> mytomatocdf <- make.cdf.env("myTOMATO.cdf") > Reading CDF file. > Creating CDF environment > Wait for about 228 > dots................................................................ .... > .................................................................... .... > .................................................................... ... > > R> Data <- ReadAffy() > R> eset <- rma(Data) > Error in getCdfInfo(object) : Could not obtain CDF environment, problems > encountered: > Specified environment does not contain myTOMATO > Library - package mytomatocdf not installed > Data for package affy did not contain mytomatocdf > Bioconductor - mytomatocdf not available Try naming your environment myTOMATO instead of mytomatocdf. Best, Jim > > Can anyone give me any idea to solve this problem? > > Sung-Chur Sim > Postdoctoral Researcher > Ohio State University, OARDC > 1680 Madison Ave. > Wooster, OH 44691 > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald University of Michigan Affymetrix and cDNA Microarray Core 1500 E Medical Center Drive Ann Arbor MI 48109 734-647-5623 ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues.