Dear Jakob, The intention of these functions is that the png files they produce will be imported into Word processing or type-setting software which can then write a pdf including a complete report. pdfLaTeX does a very elegant job of this, but even MS-Word will do it. In principle, the functions could be modified to use the pdf() device driver to write one big pdf file, but the resulting file would be huge, much larger than the sum of the png files, and not easily incorporated in reports. Best wishes Gordon >Date: Tue, 10 Oct 2006 16:30:57 +0200 >From: "Jakob Hedegaard" <jakob.hedegaard at="" agrsci.dk=""> >Subject: [BioC] Limma - plotMA3by2 & imageplot3by2 - as -pdf? >To: <bioconductor at="" stat.math.ethz.ch=""> > >Hi > >I am very happy using the Limma-functions >"plotMA3by2" and "imageplot3by2" but would like >the output as a single .pdf file instead of multiple .png files. > >Any suggestions on how to obtain this would be appreciated :-) > > >Best regards > >Jakob Hedegaard >Project scientist > > > > Danish Institute of Agricultural Sciences >Research Centre Foulum >Dept. of Genetics and Biotechnology >Blichers All? 20, P.O. BOX 50 >DK-8830 Tjele > >Phone: +45 8999 1900 >Direct: +45 8999 1363 >E-mail: Jakob.Hedegaard at agrsci.dk <mailto:jakob.hedegaard at="" agrsci.dk=""> >Web: www.agrsci.org <http: www.agrsci.org=""/> >________________________________