Entering edit mode
@denrique-escobar-espinoza-1303
Last seen 10.2 years ago
Hi
I m still having problems reading in a different way with another
package...
Is someone aware of any change? or is just a glich in my server?
Thanks
*****************************************
>print(myStr);
[1] "../VESICULES.list"
>print(file.exists(myStr));
[1] TRUE
>CELlist <-
scan(file=myStr,what=list("c"),sep="\n",quiet=TRUE) ;
>print(CELlist);
[[1]]
[1]
"/affylims/genechip/lots/VESICULES/gcos_export/R084-05MX0Z02C1.CEL.gz"
[2]
"/affylims/genechip/lots/VESICULES/gcos_export/R084-05MX1Z02C1.CEL.gz"
[3]
"/affylims/genechip/lots/VESICULES/gcos_export/R084-05MX2Z02C1.CEL.gz"
[4]
"/affylims/genechip/lots/VESICULES/gcos_export/R084-05MX3Z02C1.CEL.gz"
[5]
"/affylims/genechip/lots/VESICULES/gcos_export/R084-05MX4Z02C1.CEL.gz"
[6]
"/affylims/genechip/lots/VESICULES/gcos_export/R084-05MX5Z02C1.CEL.gz"
[7]
"/affylims/genechip/lots/VESICULES/gcos_export/R084-05MX6Z02C1.CEL.gz"
>(cels1=CELlist[[1]])
>library(affy);library(gcrma);library(plier)
PLIER V 1.3.2
See: http://www.affymetrix.com for the algorithm
For details on the R port:
http://bioinformatics.picr.man.ac.uk
mailto: microarray at picr.man.ac.uk
>print("affy gcrma plier");
[1] "affy gcrma plier"
>eSet1RMA <- justRMA (filenames=cels1 ,celfile.path="")
;
Error in function (classes, fdef, mtable) :
unable to find an inherited method for function "pData", for
signature "phenoData"
Execution halted
