Hi, I have got some aCGH data from GEO, what is the best way to get this into R in a suitable object. Is there a package that interprets Soft format or is the approach to produce tab-delimited files? Thanks -- ************************************************************** Daniel Brewer, Ph.D. Institute of Cancer Research Molecular Carcinogenesis MUCRC 15 Cotswold Road Sutton, Surrey SM2 5NG United Kingdom Tel: +44 (0) 20 8722 4109 Fax: +44 (0) 20 8722 4141 Email: daniel.brewer at icr.ac.uk

Hi, You can use the GEOquery package to import the data into R. Kind regards, Jo?o Fadista -----Original Message----- From: bioconductor-bounces@stat.math.ethz.ch [mailto:bioconductor- bounces@stat.math.ethz.ch] On Behalf Of Daniel Brewer Sent: Wednesday, January 03, 2007 11:55 AM To: bioconductor at stat.math.ethz.ch Subject: [BioC] Import GEO Soft format Hi, I have got some aCGH data from GEO, what is the best way to get this into R in a suitable object. Is there a package that interprets Soft format or is the approach to produce tab-delimited files? Thanks -- ************************************************************** Daniel Brewer, Ph.D. Institute of Cancer Research Molecular Carcinogenesis MUCRC 15 Cotswold Road Sutton, Surrey SM2 5NG United Kingdom Tel: +44 (0) 20 8722 4109 Fax: +44 (0) 20 8722 4141 Email: daniel.brewer at icr.ac.uk _______________________________________________ Bioconductor mailing list Bioconductor at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor