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I do not remember the exact mapping between changes and version numbers. But one major change is the estimate of background parameters from a windowed quantile to a loess curve. On Thu, 22 Feb 2007, Karen Vranizan wrote: > Hello. I recently re-ran gcrma on my dataset with version 2.6. Why are the results so different from those I got with version 1.1? I know there were large changes between 1.0 and 1.1, but I can't find documentation explaining the changes I am seeing with the recent gcrma. I am using simple gcrma with default arguments. Could someone direct me to a document that clearly lists the methodological changes that were introduced to the gcrma algorithm for all relevant versions? Thank you. > > > Karen Vranizan > Functional Genomics Lab > 261A Life Sciences Addition > Mail Code #3200 > UC Berkeley, CA 94720-3200 > > Phone: 510-642-7520 > Fax: 510-643-2685 > email: vranizan at berkeley.edu > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >