Error in biocLite() installation in Mac OS X 10.4
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Howard Zhang ▴ 10
@howard-zhang-2081
Last seen 9.7 years ago
HI, I recently switch from WIN XP to Max OS. When I tried to install Bioconductor using > source("http://www.bioconductor.org/biocLite.R") > biocLite() I got some errors like below. I repeated this installation at different days, but had the same error. .......... Error in sprintf(gettext(fmt, domain = domain), ...) : argument is missing, with no default In addition: Warning message: downloaded length 2004432 != reported length 7965688 gzip: stdin: unexpected end of file tar: Read 3299 bytes from /tmp/Rtmp5yiMR7/downloaded_packages/hgu95av2_1.14.0.tgz tar: Unexpected EOF in archive tar: Unexpected EOF in archive tar: Error is not recoverable: exiting now Does anyone know what is wrong? I really appreciate. Xiaowei ______________________________________________________________________ ______________ Need Mail bonding?
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Francois Pepin ★ 1.3k
@francois-pepin-1012
Last seen 9.7 years ago
Hi Xiaowei, can you reproduce the error? I think this might just be a fluke. It wasn't able to download the file properly and then complained about it. I can download the file correctly from here, so I don't think it's a problem with the bioconductor web server. As Tony said, please include the result from sessionInfo() if you still have problems. Francois On Tue, 2007-03-20 at 18:28 -0700, Howard Zhang wrote: > HI, > > I recently switch from WIN XP to Max OS. When I tried > to install Bioconductor using > > source("http://www.bioconductor.org/biocLite.R") > > biocLite() > > I got some errors like below. I repeated this > installation at different days, but had the same > error. > .......... > Error in sprintf(gettext(fmt, domain = domain), ...) : > > argument is missing, with no default > In addition: Warning message: > downloaded length 2004432 != reported length 7965688 > > gzip: stdin: unexpected end of file > tar: Read 3299 bytes from > /tmp/Rtmp5yiMR7/downloaded_packages/hgu95av2_1.14.0.tgz > tar: Unexpected EOF in archive > tar: Unexpected EOF in archive > tar: Error is not recoverable: exiting now > > Does anyone know what is wrong? I really appreciate. > > Xiaowei > > > > > ____________________________________________________________________ ________________ > Need Mail bonding? > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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Tony Chiang ▴ 570
@tony-chiang-1769
Last seen 9.7 years ago
Can you give us the output from sessionInfo(). We need a bit more information to see if we can duplicate your error. --Tony On 3/21/07, Howard Zhang <howard50003250 at="" yahoo.com=""> wrote: > HI, > > I recently switch from WIN XP to Max OS. When I tried > to install Bioconductor using > > source("http://www.bioconductor.org/biocLite.R") > > biocLite() > > I got some errors like below. I repeated this > installation at different days, but had the same > error. > .......... > Error in sprintf(gettext(fmt, domain = domain), ...) : > > argument is missing, with no default > In addition: Warning message: > downloaded length 2004432 != reported length 7965688 > > gzip: stdin: unexpected end of file > tar: Read 3299 bytes from > /tmp/Rtmp5yiMR7/downloaded_packages/hgu95av2_1.14.0.tgz > tar: Unexpected EOF in archive > tar: Unexpected EOF in archive > tar: Error is not recoverable: exiting now > > Does anyone know what is wrong? I really appreciate. > > Xiaowei > > > > > ____________________________________________________________________ ________________ > Need Mail bonding? > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
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