Hi All, I am having problems installing the Milan package whether I try to install using R CMD or I try to install from within my R session... >From the command line, I get $ R CMD INSTALL ./Rpackages/Milan_1.0.0.tar.gz * Installing *source* package 'Milan' ... ** R ** data ** inst ERROR: installing package DESCRIPTION failed >From within my R session.. I get loads of these.. WARNING: ignoring environment value of R_HOME /usr/lbiosoft/lib/R/bin/Rcmd: /usr/lbiosoft/lib/R/bin/Rcmd: No such file or directory And at the end I get... Warning messages: 1: Installation of package ellipse had non-zero exit status in: installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce) 2: Installation of package multtest had non-zero exit status in: installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce) 3: Installation of package bioclabs had non-zero exit status in: installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce) 4: Installation of package cluster had non-zero exit status in: installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce) 5: Installation of package e1071 had non-zero exit status in: installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce) 6: Installation of package randomForest had non-zero exit status in: installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce) 7: Installation of package affy had non-zero exit status in: installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce) 8: Installation of package Milan had non-zero exit status in: installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce) finally I get... > library(Milan) Error in library(Milan) : This is not a valid package -- no DESCRIPTION exists ANy help would be gratefully received! Thanks Claire -------------------------------------------------------- This email is confidential and intended solely for the use of th... {{dropped}}

I could install Milan_1.0.0.tar.gz without any problem. Was your path right? >Content-Class: urn:content-classes:message >MIME-Version: 1.0 >X-MimeOLE: Produced By Microsoft MimeOLE V6.00.2800.1165 >Date: Thu, 12 Jun 2003 14:35:00 +0100 >X-MS-Has-Attach: >X-MS-TNEF-Correlator: >Thread-Topic: Milan Package >Importance: normal >thread-index: AcMw52vvxreL52QiQqi7gq4wQb2eug== >From: "Claire Wilson" <clairewilson@picr.man.ac.uk> >To: "BioC mailing list" <bioconductor@stat.math.ethz.ch> >X-Virus-Scanned: by amavisd-milter (http://amavis.org/) >X-Virus-Scanned: by amavisd-milter (http://amavis.org/) >Content-Transfer-Encoding: 8bit >X-MIME-Autoconverted: from quoted-printable to 8bit by stat.math.ethz.ch id h5CDaKDF025524 >X-Spam-Status: No, hits=0.0 required=5.0 tests=none version=2.54 >X-Spam-Level: >X-Spam-Checker-Version: SpamAssassin 2.54 (1.174.2.17-2003-05-11-exp) >Cc: >Subject: [BioC] Milan Package >X-BeenThere: bioconductor@stat.math.ethz.ch >X-Mailman-Version: 2.1.2 >List-Id: The Bioconductor Project Mailing List <bioconductor.stat.math.ethz.ch> >List-Help: <mailto:bioconductor- request@stat.math.ethz.ch?subject="help"> >List-Post: <mailto:bioconductor@stat.math.ethz.ch> >List-Subscribe: <https: www.stat.math.ethz.ch="" mailman="" listinfo="" bioconductor="">, <mailto:bioconductor-request@stat.math.ethz.ch?subject=subscribe> >List-Archive: <https: www.stat.math.ethz.ch="" pipermail="" bioconductor=""> >List-Unsubscribe: <https: www.stat.math.ethz.ch="" mailman="" listinfo="" bioconductor="">, <mailto:bioconductor-request@stat.math.ethz.ch?subject=unsubscribe> > >Hi All, > >I am having problems installing the Milan package whether I try to install using R CMD or I try to install from within my R session... > >>From the command line, I get >$ R CMD INSTALL ./Rpackages/Milan_1.0.0.tar.gz >* Installing *source* package 'Milan' ... >** R >** data >** inst >ERROR: installing package DESCRIPTION failed > >>From within my R session.. >I get loads of these.. >WARNING: ignoring environment value of R_HOME >/usr/lbiosoft/lib/R/bin/Rcmd: /usr/lbiosoft/lib/R/bin/Rcmd: No such file or directory > >And at the end I get... >Warning messages: >1: Installation of package ellipse had non-zero exit status in: installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce) >2: Installation of package multtest had non-zero exit status in: installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce) >3: Installation of package bioclabs had non-zero exit status in: installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce) >4: Installation of package cluster had non-zero exit status in: installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce) >5: Installation of package e1071 had non-zero exit status in: installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce) >6: Installation of package randomForest had non-zero exit status in: installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce) >7: Installation of package affy had non-zero exit status in: installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce) >8: Installation of package Milan had non-zero exit status in: installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce) > >finally I get... >> library(Milan) >Error in library(Milan) : This is not a valid package -- no DESCRIPTION exists > >ANy help would be gratefully received! > >Thanks > >Claire > >-------------------------------------------------------- > > >This email is confidential and intended solely for the use of th... {{dropped}} > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor Jianhua Zhang Department of Biostatistics Dana-Farber Cancer Institute 44 Binney Street Boston, MA 02115-6084