dear list, i am running HyperG test in Category package for finding over- representation of KEGG pathways and PFAM terms. i would like to annotate the results from the PFAM analysis. is there anything similar to getPathNames() also for the PFAM terms? i have installed the package PFAM but it does something strange: > pfamAC2DE() $PF00244 [1] "14-3-3 protein" it has only one pfam-id. am i missing something? here is my sessionInfo: > sessionInfo() R version 2.5.0 (2007-04-23) i686-redhat-linux-gnu locale: LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US .UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US. UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8 ;LC_IDENTIFICATION=C attached base packages: [1] "stats" "graphics" "grDevices" "utils" "datasets" "methods" [7] "base" other attached packages: PFAM RSQLite DBI "1.16.1" "0.5-4" "0.2-3" thanks in advance for your help! sincerely d -- Dario Greco Institute of Biotechnology - University of Helsinki Building Cultivator II P.O.Box 56 Viikinkaari 4 FIN-00014 Finland Office: +358 9 191 58951 Fax: +358 9 191 58952 Mobile: +358 44 023 5780