Thanks, works perfect! -Kellie Richard Pearson wrote: > Kellie > > I think this was discussed on this list very recently ("how presence > p-values can be accessed in mas5call output?"). Anyhow, try the > following: > > assayDataElement(PACalls,"se.exprs")[1:10,] > > Regards > > Richard. > > > Kellie J. Archer, Ph.D. wrote: >> I am wanting to directly use the p-values estimated from mas5calls, >> and following the example, >> >> > data(affybatch.example) >> > PACalls <- mas5calls(affybatch.example) >> Getting probe level data... >> Computing p-values >> Making P/M/A Calls >> > se.exprs(PACalls)[1:10,] >> Error in function (classes, fdef, mtable) : >> unable to find an inherited method for function "se.exprs", >> for signature "ExpressionSet" >> >> In previous releases the p-values were stored in se.exprs, and the >> help still indicates that is the case. Does anyone know how they can >> be extracted? >> > sessionInfo() >> R version 2.5.0 (2007-04-23) >> i386-pc-mingw32 >> >> locale: >> LC_COLLATE=English_United States.1252;LC_CTYPE=English_United >> States.1252;LC_MONETARY=English_United >> States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252 >> >> attached base packages: >> [1] "tools" "stats" "graphics" "grDevices" "utils" >> "datasets" >> [7] "methods" "base" other attached packages: >> affy affyio Biobase >> "1.14.1" "1.4.0" "1.14.0" >> >> -Kellie Archer >> ------------------------------------------------------------------- ----- >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor