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On Jun 28, 2007, at 7:06 PM, ssls sddd wrote: > Dear list, > > I am using gcrma to analyze a bunch of Affy arrays and have the > following > error: > > Computing affinities[1] "Checking to see if your internet > connection works..." > [1] "Environment hthgu133acdf was not found in the Bioconductor > repository." > [1] "Checking to see if your internet connection works..." > [1] "Environment hthgu133aprobe was not found in the Bioconductor > repository." > Error in get(x, envir, mode, inherits) : variable "hthgu133aprobe" > was not found > > I happened to search the archive and found the very similar question > Sanchita had almost a year ago but I did not find any clue related > to this. > I appreciate any help on this. Alex, first let me quote from Thomas reply to you recently "Alex, If you post a message on a new topic to this list, then please start a new email thread instead of replying to an old thread that deals with a different topic." For those of us who use a reasonable email reader, we can see the different discussions in threads. It is slightly irritating that you do not start a new thread. Anyway, the error comes from the fact that you need a probe package in order to run GCRMA and appearently no-one has supplied that package to Bioconductor. It seems as if the high throughput array may have special issues, which I don't know anything about. Kasper > Sincerely, > > Alex > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/ > gmane.science.biology.informatics.conductor