Johannes Rainer wrote:
> hi,
> i just downloaded the x:map mysql database
(xmap_homo_sapiens_core_45_36g)
> and tried to install it on my local computer. i first created the
database,
> and following the installation instruction i used the
"create.script" to
> create the database. but running
>
> mysql -h localhost -u jo -p homo_sapiens_core_45_36g < create.script
>
> resulted in the error
> ERROR 1146 (42S02) at line 95: Table
> 'homo_sapiens_core_45_36g.prediction_transcript' doesn't exist
>
> looks like some misspelling in the create.script file?
> by the way i am running mysql 5.0.37
>
Hi, Johannes.
Is this a question better directed to the developers of the database?
Ensembl has a help email that you could try.
Sean
Sean Davis wrote:
> Johannes Rainer wrote:
>> hi,
>> i just downloaded the x:map mysql database
(xmap_homo_sapiens_core_45_36g)
>> and tried to install it on my local computer. i first created the
database,
>> and following the installation instruction i used the
"create.script" to
>> create the database. but running
>>
>> mysql -h localhost -u jo -p homo_sapiens_core_45_36g <
create.script
>>
>> resulted in the error
>> ERROR 1146 (42S02) at line 95: Table
>> 'homo_sapiens_core_45_36g.prediction_transcript' doesn't exist
>>
>> looks like some misspelling in the create.script file?
>> by the way i am running mysql 5.0.37
>>
> Hi, Johannes.
>
> Is this a question better directed to the developers of the
database?
> Ensembl has a help email that you could try.
>
> Sean
Try the ensembl-dev at ebi.ac.uk mailing list.
Someone will probably be able to answer your question.
Ben
--
Benoit Ballester, PhD
Hi,
I've just checked with our developer - have you installed the homo
sapiens core database (homo_sapiens_core_45_36g) from Ensembl, first?
Crispin
> -----Original Message-----
> From: bioconductor-bounces at stat.math.ethz.ch
> [mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of
> Johannes Rainer
> Sent: 05 July 2007 06:54
> To: bioconductor at stat.math.ethz.ch
> Subject: [BioC] exonmap/xmap database install problem
>
> hi,
> i just downloaded the x:map mysql database
> (xmap_homo_sapiens_core_45_36g) and tried to install it on my
> local computer. i first created the database, and following
> the installation instruction i used the "create.script" to
> create the database. but running
>
> mysql -h localhost -u jo -p homo_sapiens_core_45_36g < create.script
>
> resulted in the error
> ERROR 1146 (42S02) at line 95: Table
> 'homo_sapiens_core_45_36g.prediction_transcript' doesn't exist
>
> looks like some misspelling in the create.script file?
> by the way i am running mysql 5.0.37
>
> bests, jo
>
> --
> Johannes Rainer, Msc
> Tyrolean Cancer Research Institute
> Innrain 66, 6020 Innsbruck, Austria
> Tel.: +43 512 570485 33
> Email: johannes.rainer at tcri.at
> johannes.rainer at tugraz.at
>
> [[alternative HTML version deleted]]
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives:
> http://news.gmane.org/gmane.science.biology.informatics.conductor
>
--------------------------------------------------------
This email is confidential and intended solely for the use
o...{{dropped}}
