Dear all, When I use the limma function decideTests() with method="nestedF" to dertermine the differentially expressed genes, I encounter an error that 'nestedF method can't handle NA p-values'. I consulted the source code of the function decideTests() and learned that the NAs in the component 'F.p.value' of the eBayes() output lead to this message. I wonder how to deal with it. Any advice is welcome. Thanks in advance! Zhao