Dear Yogi,
The function normaliseIllumina() was added after version 1.4.0, hence
the
error message.
I'd recommend you upgrade to the latest release version of beadarray
(1.6.0). You'll need to install the latest version of R (2.6.0) as
well.
Best wishes,
Matt
> Dear all,
>
>
>
> I am very new to illumina analysis and I get an error every time I
run
> this command
>
>
>
>> BSData.log2.quantile = normaliseIllumina(BSData, method="quantile",
> transform="log2")
>
> Error: could not find function "normaliseIllumina"
>
>
>
> Any help would be greatly appreciated
>
>
>
> Thanks heaps
>
> Yogi
>
>
>
>
>
> R version 2.5.1 (2007-06-27)
>
> i386-pc-mingw32
>
>
>
> locale:
>
> LC_COLLATE=English_Australia.1252;LC_CTYPE=English_Australia.1252;LC
_MON
> ETARY=English_Australia.1252;LC_NUMERIC=C;LC_TIME=English_Australia.
1252
>
>
>
> attached base packages:
>
> [1] "grid" "tools" "stats" "graphics" "grDevices"
"utils"
> "datasets" "methods"
>
> [9] "base"
>
>
>
> other attached packages:
>
> beadarray beadarraySNP quantsmooth lodplot quantreg
> SparseM geneplotter lattice
>
> "1.4.0" "1.2.0" "1.2.0" "1.1" "4.08"
> "0.73" "1.14.0" "0.15-11"
>
> limma lumi annotate mgcv affy
> affyio Biobase
>
> "2.10.5" "1.2.0" "1.14.1" "1.3-25" "1.14.2"
> "1.4.1" "1.14.1"
