I am pretty new to using the R and Bioconductor package for microarray analysis. I have managed to use R for affy-expression analysis. I would like to know how or which package I could use for SNP or copy number analysis. The dataset I have to analyse is an Affy 10K Geno-chip array. Regards, Aparna.

Hi Aparna, You want to use the oligo package. Best, Jim Aparna Radhakrishnan wrote: > I am pretty new to using the R and Bioconductor package for microarray > analysis. I have managed to use R for affy-expression analysis. I would > like to know how or which package I could use for SNP or copy number > analysis. The dataset I have to analyse is an Affy 10K Geno-chip array. > > Regards, > Aparna. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623