Something like this: my.out <- cbind(MA$genes, MA$M) write.table(my.out, "normaliseddata.csv", sep=",", col.names=TRUE, row.names=FALSE) -----Original Message----- From: bioconductor-bounces@stat.math.ethz.ch [mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of J.delasHeras at ed.ac.uk Sent: 26 November 2007 14:37 To: Matthew Vitalone Cc: bioconductor at stat.math.ethz.ch Subject: Re: [BioC] exporting normalised expression valuse from LIMMA Quoting Matthew Vitalone <matthew_vitalone at="" wmi.usyd.edu.au="">: > Hi all, > > I have had a look through the archive of questions to solve my problem, > but to no help. > > Sorry if this is quite basic, but, can anyone help me with a command, > that will export the normalised expression values from Limma (two colour > experiment). > > I have been previously been using an "average" function created by the > bioinfo person that was here. I don't think that it is producing the > correct values. > > Thanks, > Matthew Hi Matthew, check the function 'write.table'. It will allow you to export matrices or data frames to a text file, tab-delimited or delimited by whatever you want. If what you want to know is *where* the normalised data is stored, you have to give a little more information about what you (or someone else) did. Preferably a bit of code? regards, Jose -- Dr. Jose I. de las Heras Email: J.delasHeras at ed.ac.uk The Wellcome Trust Centre for Cell Biology Phone: +44 (0)131 6513374 Institute for Cell & Molecular Biology Fax: +44 (0)131 6507360 Swann Building, Mayfield Road University of Edinburgh Edinburgh EH9 3JR UK -- The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. _______________________________________________ Bioconductor mailing list Bioconductor at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor