Entering edit mode
@fabiodezimailpolimiit-2627
Last seen 10.6 years ago
Dear all
i'm trying reading Affymetrix microarray data using ReadAffy
command,but i get the error:
Error in read.affybatch(filenames = l$filenames, phenoData =
l$phenoData, :
Calloc can't allocate memory (1819626853 of 1)
Warning messages:
1: In read.affybatch(filenames = l$filenames, phenoData = l$phenoData,
:
Reached total allocation of 1535Mb: see help(memory.size)
my memory size is 2GB and this data are from S.Raphael Hospital(33
arrays).In the previous simulations (for training) i worked on data
from GEO database and i've never had problems in making all the
analysis (reading,normalization,etc.), also with the same number of
arrays of this. Now i can't read a single microarray.I don't
understand this difference by what is caused.
Thanks for your attention and help.
Best regards
Fabio Dezi
Department of Biomedical Engineering
Polytechnic University of Milan