An embedded and charset-unspecified text was scrubbed... Name: not available Url: https://stat.ethz.ch/pipermail/bioconductor/attachments/20080305/ 5af27f50/attachment.pl

Hi Stanley, Not sure I understand the question. If you just want 'raw' t-statistics why don't you use rowttests from genefilter? Best, Jim Ng Stanley wrote: > Hi, > > Is it possible to use the design and contrast matrix (from limma) to compute > the raw t-values of MA without lmFit, contrasts.fit and eBayes ? > > Thanks > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623