Anyone Working with Imagene Data Files
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@barry-henderson-49
Last seen 10.2 years ago
This is a multi-part message in MIME format. ------_=_NextPart_001_01C21B86.94045FB2 Content-Type: multipart/alternative; boundary="----_=_NextPart_002_01C21B86.94045FB2" ------_=_NextPart_002_01C21B86.94045FB2 Content-Type: text/plain; charset="us-ascii" Content-Transfer-Encoding: quoted-printable Hi =20 Is anyone working with Imagene data files? Imagene creates 2 data files, one for each laser making the data input somewhat more complicated than for Spot or Genepix. =20 =20 Thanks =20 Barry =20 Barry S. Henderson, Ph.D. Senior Scientist Ribonomics, Inc. barry.henderson@ribonomics.com =20 =20 <http: www.ribonomics.com=""/>=20 =20 =20 =20 ------_=_NextPart_002_01C21B86.94045FB2 Content-Type: text/html; charset="us-ascii" Content-Transfer-Encoding: quoted-printable <html xmlns:v="3D" urn:schemas-microsoft-com:vml""="=" ""="" xmlns:o="3D" urn:schemas-microsoft-com:office:office""="=" ""="" xmlns:w="3D" urn:schemas-microsoft-com:office:word""="=" ""="" xmlns="3D" <a="" href="&lt;a href=" http:="" www.w3.org="" TR="" REC-html40"="" rel="nofollow">http://www.w3.org/TR/REC-html40" rel="nofollow">http://www.w3.org/TR/REC-html40""> <head> <meta http-equiv="3D" Content-Type""="" content="3D" text="" html;"="=" ""="" charset="3Dus-ascii" "=""> <meta name="3DProgId" content="3DWord.Document"> <meta name="3DGenerator" content="3D" Microsoft"="" word="" 10"=""> <meta name="3DOriginator" content="3D" Microsoft"="" word="" 10"=""> <link rel="3DFile-List" href="3D" cid:filelist.xml@01C21B65.0C93B9D0""=""> <link rel="3DEdit-Time-Data" href="3D" cid:editdata.mso@01C21B65.0C93B9D0""=""> <style> </style> </head> <body lang="3DEN-US" link="3Dblue" vlink="3Dpurple" =="" style="3D'tab-interval:.5in'">

<font size="3D2" face="3DArial">Hi<o:p></o:p></font>

<font size="3D2" face="3DArial"><o:p> </o:p></font>

<font size="3D2" face="3DArial">Is anyone working with Imagene data files?  Imagene creates 2 data files, = one for each laser making the data input somewhat more complicated than for Spot or = Genepix.  <o:p></o:p></font>

<font size="3D2" face="3DArial"><o:p> </o:p></font>

<font size="3D2" face="3DArial">Thanks<o:p></o:p></font>

<font size="3D2" face="3DArial"><o:p> </o:p></font>

<font size="3D2" face="3DArial">Barry<o:p></o:p></font>

<font size="3D2" face="3DArial"><o:p> </o:p></font>

<font size="3D3" =="" face="3D"Times" new="" roman"="">Barry S. Henderson, = Ph.D.</font><font size="3D2" face="3DArial">
Senior Scientist
Ribonomics, Inc.
barry.henderson@ribonom ics= .com</font>
  <font color="3Dblack"><o:p></o:p></font>

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<font size="3D3" face="3D"Times" new="" roman"="">3D"Ribonomics:<o:p></o:p></font>

<font size="3D3" color="3Dblack" face="3D"Times" new="" roman"=""><o:p> </o:p></font>

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Jess Mar ▴ 20
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Last seen 10.2 years ago
This is a multi-part message in MIME format. ------=_NextPart_000_0004_01C21BE1.8B580BF0 Content-Type: multipart/alternative; boundary="----=_NextPart_001_0005_01C21BE1.8B580BF0" ------=_NextPart_001_0005_01C21BE1.8B580BF0 Content-Type: text/plain; charset="us-ascii" Content-Transfer-Encoding: 7bit Sure, what do you want to do with them? -----Original Message----- From: bioconductor-admin@stat.math.ethz.ch [mailto:bioconductor-admin@stat.math.ethz.ch]On Behalf Of Barry Henderson Sent: Monday, 24 June 2002 11:54 PM To: bioconductor@stat.math.ethz.ch Subject: [BioC] Anyone Working with Imagene Data Files Hi Is anyone working with Imagene data files? Imagene creates 2 data files, one for each laser making the data input somewhat more complicated than for Spot or Genepix. Thanks Barry Barry S. Henderson, Ph.D. Senior Scientist Ribonomics, Inc. barry.henderson@ribonomics.com ------=_NextPart_001_0005_01C21BE1.8B580BF0 Content-Type: text/html; charset="us-ascii" Content-Transfer-Encoding: quoted-printable <html xmlns="3D" <a="" href="&lt;a href=" http:="" www.w3.org="" TR="" REC-html40"="" rel="nofollow">http://www.w3.org/TR/REC-html40" rel="nofollow">http://www.w3.org/TR/REC-html40"" xmlns:v="3D=20" "urn:schemas-microsoft-com:vml"="" xmlns:o="3D=20" "urn:schemas-microsoft-com:office:office"="" xmlns:w="3D=20" "urn:schemas-microsoft-com:office:word"=""><head> <meta http-equiv="3DContent-Type" content="3D" text="" html;"="=" ""="" charset="3Dus-ascii" "=""> <meta content="3DWord.Document" name="3DProgId"> <meta content="3D" MSHTML"="" 6.00.2716.2200"="" name="3DGENERATOR"> <meta content="3D" Microsoft"="" word="" 10"="" name="3DOriginator"><link=20 href="3D" cid:filelist.xml@01C21B65.0C93B9D0""="" rel="3DFile-List"><link=20 href="3D" cid:editdata.mso@01C21B65.0C93B9D0""="" rel="3DEdit-Time-" data=""> <style>@page Section1 {size: 8.5in 11.0in; margin: 1.0in 1.25in 1.0in = 1.25in; mso-header-margin: .5in; mso-footer-margin: .5in; = mso-paper-source: 0; } P.MsoNormal { FONT-SIZE: 12pt; MARGIN: 0in 0in 0pt; FONT-FAMILY: "Times New Roman"; = mso-style-parent: ""; mso-pagination: widow-orphan; = mso-fareast-font-family: "Times New Roman" } LI.MsoNormal { FONT-SIZE: 12pt; MARGIN: 0in 0in 0pt; FONT-FAMILY: "Times New Roman"; = mso-style-parent: ""; mso-pagination: widow-orphan; = mso-fareast-font-family: "Times New Roman" } DIV.MsoNormal { FONT-SIZE: 12pt; MARGIN: 0in 0in 0pt; FONT-FAMILY: "Times New Roman"; = mso-style-parent: ""; mso-pagination: widow-orphan; = mso-fareast-font-family: "Times New Roman" } A:link { COLOR: blue; TEXT-DECORATION: underline; text-underline: single } SPAN.MsoHyperlink { COLOR: blue; TEXT-DECORATION: underline; text-underline: single } A:visited { COLOR: purple; TEXT-DECORATION: underline; text-underline: single } SPAN.MsoHyperlinkFollowed { COLOR: purple; TEXT-DECORATION: underline; text-underline: single } SPAN.EmailStyle17 { COLOR: windowtext; FONT-FAMILY: Arial; mso-style-type: = personal-compose; mso-style-noshow: yes; mso-ansi-font-size: 10.0pt; = mso-bidi-font-size: 10.0pt; mso-ascii-font-family: Arial; = mso-hansi-font-family: Arial; mso-bidi-font-family: Arial } DIV.Section1 { page: Section1 } </style> </head> <body lang="3DEN-US" style="3D" tab-interval:"="" .5in"="" vlink="3Dpurple" =="" link="3Dblue">
<font face="3DArial" color="3D#0000ff" size="3D2">Sure,=20 what do you want to do with them?</font>
<font face="3DArial" color="3D#0000ff" size="3D2"><span=20 class="3D516244314-24062002"></font> 
<font =="" face="3DTahoma=20" size="3D2">-----Original Message-----
From:=20 bioconductor-admin@stat.math.ethz.ch=20 [mailto:bioconductor-admin@stat.math.ethz.ch]On Behalf Of Barry = Henderson
Sent: Monday, 24 June 2002 11:54 PM
To:=20 bioconductor@stat.math.ethz.ch
Subject: [BioC] Anyone = Working with=20 Imagene Data Files

</font>

<font face="3DArial" size="3D2"><span=20 style="3D"FONT-SIZE:" 10pt;="" font-family:="Arial"">Hi<o:p></o:p></font>

<font face="3DArial" size="3D2"><span=20 style="3D"FONT-SIZE:" 10pt;="" font-family:="Arial""><o:p> </o:p></font>

<font face="3DArial" size="3D2"><span=20 style="3D"FONT-SIZE:" 10pt;="" font-family:="" arial"="">Is anyone working with = Imagene=20 data files?  Imagene = creates 2=20 data files, one for each laser making the data input somewhat more = complicated=20 than for Spot or Genepix. =20 <o:p></o:p></font>

<font face="3DArial" size="3D2"><span=20 style="3D"FONT-SIZE:" 10pt;="" font-family:="Arial""><o:p> </o:p></font>

<font face="3DArial" size="3D2"><span=20 style="3D"FONT-SIZE:" 10pt;="" font-family:="Arial"">Thanks<o:p></o:p></font>

<font face="3DArial" size="3D2"><span=20 style="3D"FONT-SIZE:" 10pt;="" font-family:="Arial""><o:p> </o:p></font>

<font face="3DArial" size="3D2"><span=20 style="3D"FONT-SIZE:" 10pt;="" font-family:="Arial"">Barry<o:p></o:p></font>

<font face="3DArial" size="3D2"><span=20 style="3D"FONT-SIZE:" 10pt;="" font-family:="Arial""><o:p> </o:p></font>

<td=20 style="3D"PADDING-RIGHT:" 0in;="" padding-left:="" 0in;="" padding-bottom:="0in;" padding-top:="" 0in"="">

<font=20 face="3D"Times" new="" roman"="" size="3D3"><span=20 style="3D"FONT-SIZE:" 12pt;="" mso-no-proof:="" yes"="">Barry S. Henderson, = Ph.D.</font><font face="3DArial" =="" size="3D2"><span=20 style="3D"FONT-SIZE:" 10pt;="" font-family:="" arial;="" mso-no-proof:="yes"">
<span=20 style="3D"FONT-STYLE:" italic"="">Senior Scientist
Ribonomics, = Inc.
<a=20 =="" href="3D"mailto:barry.henderson@ribonomics.com"">barry.henderson@ribonom ics= .com</font><span=20 style="3D"mso-no-proof:" yes"="">
  <font color="3Dblack"><o:p></o:p></font>

<td=20 style="3D"PADDING-RIGHT:" 0in;="" padding-left:="" 0in;="" padding-bottom:="0in;" padding-top:="" 0in"="">

<font=20 face="3D"Times" new="" roman"="" size="3D3"><span=20 style="3D"FONT-SIZE:" 12pt;="" mso-no-proof:="" yes"=""> <font =="" color="3Dblack"><span=20 style="3D"COLOR:" =="" black"=""><o:p></o:p></font></font>

<td=20 style="3D"PADDING-RIGHT:" 0in;="" padding-left:="" 0in;="" padding-bottom:="0in;" padding-top:="" 0in"="">

<font=20 face="3D" Times"="" new="" roman"="" size="3D3"><span=20 style="3D" FONT-SIZE:"="" 12pt;="" mso-no-proof:="" yes"=""><a=20 href="3D" <a="" href="&lt;a href=" http:="" www.ribonomics.com="" "="" rel="nofollow">http://www.ribonomics.com/" rel="nofollow">http://www.ribonomics.com/""><span=20 style="3D" TEXT-DECORATION:"="" none;="" text-underline:="" none"="">3D"Ribonomics:<o:p></o:p></font>

<font=20 face="3D"Times" new="" roman"="" color="3Dblack" size="3D3"><span=20 style="3D"FONT-SIZE:" 12pt;="" color:="" black;="" mso-no-proof:="yes""><o:p> </o:p></font>

<td=20 style="3D"PADDING-RIGHT:" 0in;="" padding-left:="" 0in;="" padding-bottom:="0in;" padding-top:="" 0in"="">

<font=20 face="3D"Times" new="" roman"="" size="3D3"><span=20 style="3D"FONT-SIZE:" 12pt;="" mso-no-proof:="" yes"=""> <font =="" color="3Dblack"><span=20 style="3D"COLOR:" =="" black"=""><o:p></o:p></font></font>

<font face="3D"Times" new="" roman"="" size="3D3"><span=20 style="3D"FONT-SIZE:" =="" 12pt"=""><o:p> </o:p></font>

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@barry-henderson-49
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This is a multi-part message in MIME format. ------_=_NextPart_001_01C21C4B.2B4CC061 Content-Type: multipart/alternative; boundary="----_=_NextPart_002_01C21C4B.2B4CC061" ------_=_NextPart_002_01C21C4B.2B4CC061 Content-Type: text/plain; charset="us-ascii" Content-Transfer-Encoding: quoted-printable I was hoping for a method for importing into BioConductor akin to how marrayInput deals with GenPix and Spot data. From there I hope to explore the general functionality of BioConductor for normalization and ID of differentially expressed genes. =20 Barry =20 -----Original Message----- From: Jess Mar [mailto:jcm@maths.uq.edu.au]=20 Sent: Monday, June 24, 2002 10:45 AM To: Barry Henderson Cc: bioconductor@stat.math.ethz.ch Subject: RE: [BioC] Anyone Working with Imagene Data Files =20 Sure, what do you want to do with them? =20 -----Original Message----- From: bioconductor-admin@stat.math.ethz.ch [mailto:bioconductor-admin@stat.math.ethz.ch]On Behalf Of Barry Henderson Sent: Monday, 24 June 2002 11:54 PM To: bioconductor@stat.math.ethz.ch Subject: [BioC] Anyone Working with Imagene Data Files Hi =20 Is anyone working with Imagene data files? Imagene creates 2 data files, one for each laser making the data input somewhat more complicated than for Spot or Genepix. =20 =20 Thanks =20 Barry =20 Barry S. Henderson, Ph.D. Senior Scientist Ribonomics, Inc. barry.henderson@ribonomics.com =20 =20 <http: www.ribonomics.com=""/>=20 =20 =20 =20 ------_=_NextPart_002_01C21C4B.2B4CC061 Content-Type: text/html; charset="us-ascii" Content-Transfer-Encoding: quoted-printable <html xmlns:v="3D" urn:schemas-microsoft-com:vml""="=" ""="" xmlns:o="3D" urn:schemas-microsoft-com:office:office""="=" ""="" xmlns:w="3D" urn:schemas-microsoft-com:office:word""="=" ""="" xmlns:st1="3D" urn:schemas-microsoft-com:office:smarttags""="=" ""="" xmlns="3D" <a="" href="&lt;a href=" http:="" www.w3.org="" TR="" REC-html40"="" rel="nofollow">http://www.w3.org/TR/REC-html40" rel="nofollow">http://www.w3.org/TR/REC-html40""> <head> <meta http-equiv="3D" Content-Type""="" content="3D" text="" html;"="=" ""="" charset="3Dus-ascii" "=""> <meta name="3DProgId" content="3DWord.Document"> <meta name="3DGenerator" content="3D" Microsoft"="" word="" 10"=""> <meta name="3DOriginator" content="3D" Microsoft"="" word="" 10"=""> <link rel="3DFile-List" href="3D" cid:filelist.xml@01C21C29.A3EE5E60""=""> <link rel="3DEdit-Time-Data" href="3D" cid:editdata.mso@01C21C29.A3EE5E60""=""> <o:smarttagtype namespaceuri="3D" urn:schemas-microsoft-com:office:smarttags""="=" ""="" name="3D" time"="" "=""> <o:smarttagtype =="" namespaceuri="3D" urn:schemas-microsoft-com:office:smarttags""="" name="3D" date"="" "=""> <style> </style> </head> <body lang="3DEN-US" link="3Dblue" vlink="3Dpurple" =="" style="3D'tab-interval:.5in'">

<font size="3D2" color="3Dnavy" face="3DArial">I was hoping for a method for = importing into BioConductor akin to how marrayInput deals with GenPix and Spot data.  From there I hope to explore the = general functionality of BioConductor for = normalization and ID of differentially expressed genes.<o:p></o:p></font>

<font size="3D2" color="3Dnavy" face="3DArial"><o:p> </o:p></font>

<font size="3D2" color="3Dnavy" face="3DArial">Barry<o:p></o:p></font>

<font size="3D2" color="3Dnavy" face="3DArial"><o:p> </o:p></font>

<font size="3D2" =="" face="3DTahoma">-----Original = Message-----
From: Jess Mar [mailto:jcm@maths.uq.edu.au]
Sent: = </font><st1:date month="3D"6"" day="3D"24"" year="3D"2002""><font size="3D2" face="3DTahoma">Monday, June 24, = 2002</font></st1:date><font size="3D2" face="3DTahoma"> </font><st1:time hour="3D"10"" minute="3D"45""><font size="3D2" face="3DTahoma">10:45 AM</font></st1:time><font size="3D2" =="" face="3DTahoma">
To: Barry Henderson
Cc: = bioconductor@stat.math.ethz.ch
Subject: RE: [BioC] = Anyone Working with Imagene Data Files</font>

<font size="3D3" =="" face="3D"Times" new="" roman"=""><o:p> </o:p></font>

<font size="3D2" =="" color="3Dblue" face="3DArial">Sure, what do = you want to do with them?</font><o:p></o:p>

<font size="3D3" =="" face="3D"Times" new="" roman"=""> <o:p></o:p></font>

<font size="3D2" face="3DTahoma">-----Original Message-----
From: bioconductor-admin@stat.math.ethz.ch [mailto:bioconductor-admin@stat.math.ethz.ch]On Behalf Of Barry Henderson
Sent: Monday, 24 June = 2002 11:54 PM
To: = bioconductor@stat.math.ethz.ch
Subject: [BioC] Anyone = Working with Imagene Data Files</font><o:p></o:p>

<font size="3D2" =="" face="3DArial">Hi<o:p></o:p></font><= /p>

<font size="3D2" =="" face="3DArial"><o:p> </o:p></fo=>

<font size="3D2" =="" face="3DArial">Is anyone working with = Imagene data files?  Imagene creates 2 = data files, one for each laser making the data input somewhat more complicated than for = Spot or Genepix.  = <o:p></o:p></font>

<font size="3D2" =="" face="3DArial"><o:p> </o:p></fo=>

<font size="3D2" =="" face="3DArial">Thanks<o:p></o:p></fo=>

<font size="3D2" =="" face="3DArial"><o:p> </o:p></fo=>

<font size="3D2" =="" face="3DArial">Barry<o:p></o:p></fon=>

<font size="3D2" =="" face="3DArial"><o:p> </o:p></fo=>

<font size="3D3" =="" face="3D"Times" new="" roman"="">Barry S. Henderson, = Ph.D.</font><font size="3D2" face="3DArial">
Senior Scientist
Ribonomics, Inc.
barry.henderson@ribonom ics= .com</font>
  <font color="3Dblack"><o:p></o:p></font>

<font size="3D3" face="3D"Times" new="Roman""> <font =="" color="3Dblack"><o:p></o:p></font></font>

<font size="3D3" face="3D"Times" new="" roman"="">3D"Ribonomics:<o:p></o:p></font>

<font size="3D3" color="3Dblack" face="3D"Times" new="" roman"=""><o:p> </o:p></font>

<font size="3D3" face="3D"Times" new="Roman""> <font =="" color="3Dblack"><o:p></o:p></font></font>

<font size="3D3" =="" face="3D"Times" new="" roman"=""><o:p> </o:p></font>

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