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On Sun, Apr 13, 2008 at 8:17 PM, Andrew Yee <andrewjyee at="" gmail.com=""> wrote: > Hi, is there a package that will convert coordinates from e.g. NCBI build 34 > to NCBI build 36? Hello, Andrew. There is not such a package. You can use the UCSC litfOver tool here: http://genome.ucsc.edu/cgi-bin/hgLiftOver to do this, though. Alternatively, if you have something like oligo probes, you can use alignment tools like blat, gmap or the Biostrings package (devel only) to remap the probes to the new assembly. Hope that helps. Sean