How to get all genes in the summary table of siggenes SAM
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@wxumsiumnedu-1819
Last seen 10.2 years ago
Hello, Is there a way to get all genes' info in the SAM result table? sam.out <- sam(samples.mat,cl,method="d.stat",rand=123,p0=0.95); sum.table<-summary(sam.out,0,ll=F,file = "result.csv",sep=",",quote=F); Error in stats.cal(object at d, object at d.bar, object at vec.false, object at p0, : delta must be larger than 0. If I put the delta number larger than 0, I cannot get all genes. The genes whose FDR is close to 1 is filtered out. But I need all info for all genes for further process. I found the stats.cal.R code, but don't know how to make it work, Thanks in advance, Wayne
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