Dear Cei and other lumi users, The lumi package paper has been published by Bioinformatics (Advance Access): http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btn224 Please cite: "Du, P., Kibbe, W.A. and Lin, S.M., 'lumi: a pipeline for processing Illumina microarray', Bioinformatics 2008 (Advance Access published online on May 8, 2008)" Thanks! Have a nice day, Pan On 4/9/08 5:24 AM, "Cei Abreu-Goodger" <cei at="" sanger.ac.uk=""> wrote: > Hi Pan, > > I wasn't sure if I should email this to the "bioconductor" mailing list, > since for now I'm only concerned with the lumi package. I want to know > how I should reference it. You mention a reference for VST, nuID and a > comparison paper in the lumi vignette. Suppose I didn't use VST or nuID, > but just used lumiR with log2/quantile normalization. What would be your > preference for citing lumi as a "general" package for processing > Illumina data? > > Many thanks, > > Cei >