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martin sikora
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60
@martin-sikora-2802
Last seen 10.0 years ago
dear list members,
i'm having a problem installing the biomaRt package on my linux
machine,
due to the fact of a compilation error with RCurl. i am using R 2.6.2
on
fedora 7, and this is the output i get:
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/include/R
-DHAVE_LIBIDN_FIELD=1 -I/usr/local/include -fpic -O2 -g -pipe
-Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c base64.c -o base64.o
In file included from base64.c:1:
Rcurl.h:52: error: expected specifier-qualifier-list before ?cetype_t?
base64.c: In function ?R_base64_decode?:
base64.c:25: warning: pointer targets in assignment differ in
signedness
base64.c:39: warning: pointer targets in passing argument 1 of
?Rf_mkString? differ in signedness
base64.c: In function ?R_base64_encode?:
base64.c:60: warning: pointer targets in assignment differ in
signedness
make: *** [base64.o] Error 1
as far as i know i have all the necessary libraries installed:
$ yum list installed | grep libxml
libxml2.i386 2.6.31-1.fc7
installed
libxml2-devel.i386 2.6.31-1.fc7
installed
libxml2-python.i386 2.6.31-1.fc7
installed
perl-libxml-perl.noarch 0.08-1.2.1
installed
$ yum list installed | grep curl
curl.i386 7.16.4-1.fc7
installed
curl-devel.i386 7.16.4-1.fc7
installed
python-pycurl.i386 7.16.0-0.1.20061207.fc
installed
as i am not an expert in linux stuff, i was wondering if there could
be
any other missing libraries? any other ideas?
cheers
martin
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