Entering edit mode
Morten Mattingsdal
▴
190
@morten-mattingsdal-1907
Last seen 10.2 years ago
Hi,
Ive just intstalled a fresh version of R 2.7.0 and want to run CRLMM
on
~780 Affymetrix chips.
When installing the subsequent platform design "pd.genomewidesnp.6_0"
I
get the following errors:
R CMD INSTALL pd.genomewidesnp.6_0.4.2.tar.gz
tar: pd.genomewidesnp.6/inst/extdata/pd.genomewidesnp.6.sqlite: Wrote
only 1024 of 10240 bytes
tar: Skipping to next header
tar: Archive contains obsolescent base-64 headers
tar: pd.genomewidesnp.6/inst/UnitTests: Cannot mkdir: No space left on
device
tar: pd.genomewidesnp.6/inst/UnitTests/crlmm_test.R: Cannot open: No
such file or directory
tar: pd.genomewidesnp.6/inst/UnitTests/runfile.sh: Cannot open: No
such
file or directory
tar: pd.genomewidesnp.6/inst/UnitTests/Makefile: Cannot open: No such
file or directory
tar: pd.genomewidesnp.6/inst/UnitTests/checkTables_test.R: Cannot
open:
No such file or directory
tar: pd.genomewidesnp.6/inst/UnitTests/runalltests.R: Cannot open: No
such file or directory
tar: pd.genomewidesnp.6/inst/UnitTests/runall.sh: Cannot open: No such
file or directory
tar: pd.genomewidesnp.6/R: Cannot mkdir: No space left on device
tar: pd.genomewidesnp.6/R/all.R: Cannot open: No such file or
directory
tar: Error exit delayed from previous errors
Fatal error: cannot mkdir R_TempDir
* Installing to library ''
ERROR: cannot write to or create directory '
My harddisk is not full, so I wounder if this version
pd.genomewidesnp.6_0 is broken. (pd.genomewidesnp.6_0.4.2.tar.gz)
morten
> sessionInfo()
R version 2.7.0 (2008-04-22)
x86_64-unknown-linux-gnu
locale:
LC_CTYPE=en_US;LC_NUMERIC=C;LC_TIME=en_US;LC_COLLATE=en_US;LC_MONETARY
=C;LC_MESSAGES=en_US;LC_PAPER=en_US;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHON
E=C;LC_MEASUREMENT=en_US;LC_IDENTIFICATION=C
attached base packages:
[1] splines tools stats graphics grDevices utils
datasets
[8] methods base
other attached packages:
[1] oligo_1.4.0 oligoClasses_1.2.0 affxparser_1.12.2
[4] AnnotationDbi_1.2.1 preprocessCore_1.2.0 RSQLite_0.6-9
[7] DBI_0.2-4