>>> "Henrik Bengtsson" <hb at="" stat.berkeley.edu=""> wrote: > Hi, > > see the aroma.affymetrix package > (http://groups.google.com/group/aroma-affymetrix/). There is an > online Vignette 'Total copy number analysis (10K, 100K, 500K)' doing > what you want at > > > http://groups.google.com/group/aroma-affymetrix/web/total-copy- number-analysis > > > My $100,000 Wow! And I thought gas prices have gone through the roof. I think you were only charging $0.02 just yesterday. Maybe we need a senate inquiry into price gouging by HB? ;-P Jim > > Cheers > > Henrik > > On Fri, Jun 20, 2008 at 3:19 AM, Daniel Brewer <daniel.brewer at="" icr.ac.uk=""> > wrote: >> Hello, >> >> I have recently got a bunch of Affymetrix SNP 500k CEL files that I >> would like to analyse. I haven't done any work on SNP arrays before >> but have done a fair amount of aCGH stuff. What I would like to be able >> to do is apply something like DNAcopy to the data and be able to >> visualise and export where there are amplifications etc.. Currently, I >> am not concerned with the allele stuff. >> >> Could anyone give me an example workflow to do this and what packages >> they used. >> >> Many thanks >> >> -- >> ************************************************************** >> Daniel Brewer, Ph.D. >> >> Institute of Cancer Research >> Molecular Carcinogenesis >> Email: daniel.brewer at icr.ac.uk >> ************************************************************** >> >> The Institute of Cancer Research: Royal Cancer Hospital, a charitable > Company Limited by Guarantee, Registered in England under Company No. 534147 > with its Registered Office at 123 Old Brompton Road, London SW7 3RP. >> >> This e-mail message is confidential and for use by the a...{{dropped:2}} >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues