Bioconductor installation
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Sean Cassidy ▴ 10
@sean-cassidy-2891
Last seen 11.4 years ago
hi, i'm trying to install bioconductor on a red hat linux enterprise unix system. i've followed the instructions on the installation site using the following: source("http://bioconductor.org/biocLite.R") biocLite() and no apparant errors seem to come up, but when i try to use any command that's part of the bioconductor distribution, my R doesn't seem to be able to find it. i've also tried downloading some packages independently and using the "R CMD INSTALL" method, but that doesn't allow me to run the command either. when i look in the ~/R-2.7.0/library directory i see the packages, but i still can't seem to use the commands? any suggestions? [[alternative HTML version deleted]]
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@kasper-daniel-hansen-2979
Last seen 2.6 years ago
United States
use R> library(PACKAGENAME) where PACKAGENAME is the name of the package you want to use. This is a really basic R question, I suggest you read "An introduction to R" which is a PDF that you get with R (you can also find it at the r-project.org website) Kasper On Jul 2, 2008, at 7:46 PM, Sean Cassidy wrote: > hi, i'm trying to install bioconductor on a red hat linux enterprise > unix > system. i've followed the instructions on the installation site > using the > following: > > source("http://bioconductor.org/biocLite.R") > biocLite() > and no apparant errors seem to come up, but when i try to use any > command > that's part of the bioconductor distribution, my R doesn't seem to > be able > to find it. i've also tried downloading some packages independently > and > using the "R CMD INSTALL" method, but that doesn't allow me to run the > command either. when i look in the ~/R-2.7.0/library directory i > see the > packages, but i still can't seem to use the commands? any suggestions? > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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