Hi there ... I'm probably just overlooking something obvious, but I didn't see this in the oligo package. I was hoping to be able to generate the signal values for samples in SNP datasets in the same manner as dChip & genepattern do. As an example, the Genepattern .SNP file format each sample has both an intensity and a call column. Thanks -J

Hi, see recent BioC thread 'dChip LOH and copy number analysis' on Sept 17, 2008: https://stat.ethz.ch/pipermail/bioconductor/2008-September/024208.html Could be what you are looking for. /Henrik On Thu, Sep 25, 2008 at 12:25 PM, Jeff Gentry <jgentry at="" jimmy.harvard.edu=""> wrote: > Hi there ... > > I'm probably just overlooking something obvious, but I didn't see this in > the oligo package. I was hoping to be able to generate the signal > values for samples in SNP datasets in the same manner as dChip & > genepattern do. As an example, the Genepattern .SNP file format each > sample has both an intensity and a call column. > > Thanks > -J > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >