Hi, I know R package of crlmm can be used to get the copy number from snp array. But If I have tumor and its paired normal samples, I can not use the crlmm. Could you tell which R packages can be used to analyze the paired samples? Thanks a lot. Hailei The information transmitted in this electronic communica...{{dropped:14}}

For CN analysis, try aroma.affymetrix; http://www.braju.com/R/aroma-affymetrix/ /Henrik On Thu, Oct 9, 2008 at 7:37 AM, Zhang, Hailei <hailei_zhang at="" dfci.harvard.edu=""> wrote: > Hi, > > I know R package of crlmm can be used to get the copy number from snp array. > But If I have tumor and its paired normal samples, I can not use the crlmm. > Could you tell which R packages can be used to analyze the paired samples? > Thanks a lot. > > > > Hailei > > > The information transmitted in this electronic communica...{{dropped:14}} > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >