how to put together 600 files from the 5.0 Affy SNPchip
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@laura-rodriguez-murillo-3129
Last seen 10.2 years ago
Hi, I'm new in this mailing list and also using bioconductor. I'd appreciate your feedback on this: I have 622 files that correspond to 622 samples genotyped for the SNPs in the 5.0 SNPChip from Affymetrix. Each file consists of two columns of almost 500 K rows (plus 4 lines at the begining that I won't need). The number of rows are the same in every file. I would need to put all these files together, where the first column is common to all of them (SNP names) (so I just need it once in the big file). Once I have all the columns one after the other I would also need to paste a column with the chromosome number for each SNP (which is in another file, just this info alone). Do you know if there's any way to do this with Bioconductor?. Thank you! Laura
SNP SNPchip SNP SNPchip • 1.7k views
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@laura-rodriguez-murillo-3129
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David, Thank you for your reply. I had tried with this software but it doesn't recognize my files, it looks as it doesn't like .txt files. Any idea? Laura 2008/11/6 David Carter <dcarter at="" robarts.ca="">: > Hi Laura, > Affymetrix has a free tool (free and easy to download) called Genotyping > Console that will export 1 file for all your samples with SNPs on rows and > samples on columns. I haven't tried it with 622 samples though... > Sincerely, > David Carter > > > Laura Rodriguez Murillo wrote: >> >> Hi, >> I'm new in this mailing list and also using bioconductor. I'd >> appreciate your feedback on this: I have 622 files that correspond to >> 622 samples genotyped for the SNPs in the 5.0 SNPChip from Affymetrix. >> Each file consists of two columns of almost 500 K rows (plus 4 lines >> at the begining that I won't need). The number of rows are the same in >> every file. I would need to put all these files together, where the >> first column is common to all of them (SNP names) (so I just need it >> once in the big file). Once I have all the columns one after the other >> I would also need to paste a column with the chromosome number for >> each SNP (which is in another file, just this info alone). Do you know >> if there's any way to do this with Bioconductor?. >> >> Thank you! >> >> Laura >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> >> > > -- > David Carter > Facility Manager > London Regional Genomics Centre > Robarts Research Institute, Room 4.01 > PO Box 5015, 100 Perth Drive > London, Ontario, Canada, N6A 5K8 > > phone: 519-663-3253 > fax: 519-663-3037 > > dcarter at robarts.ca > http://www.lrgc.ca > > >
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@laura-rodriguez-murillo-3129
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Benilton, Thank you. Unfortunately, the paste command doesn't work with these big files. Does this only work with R under unix or is it possible in windows?. Otherwise, I'll try with R when I get back to the unix machine. Laura 2008/11/7 Benilton Carvalho <bcarvalh at="" jhsph.edu="">: > Laura, > > if you're running *NIX, can't you just use the bash command "paste"? > > if you really want to use R, assume you have names of your files in the > variable "files", then something like: > > ## This goes in R and assumes you're running *NIX > cmd <- paste("paste", paste(files, collapse=" "), "> output.txt") > system(cmd) > > later, you can just get rid of the first 4 lines of output.txt. > > b > > On Nov 7, 2008, at 3:04 PM, Laura Rodriguez Murillo wrote: > >> David, >> >> Thank you for your reply. I had tried with this software but it >> doesn't recognize my files, it looks as it doesn't like .txt files. >> Any idea? >> >> Laura >> >> 2008/11/6 David Carter <dcarter at="" robarts.ca="">: >>> >>> Hi Laura, >>> Affymetrix has a free tool (free and easy to download) called Genotyping >>> Console that will export 1 file for all your samples with SNPs on rows >>> and >>> samples on columns. I haven't tried it with 622 samples though... >>> Sincerely, >>> David Carter >>> >>> >>> Laura Rodriguez Murillo wrote: >>>> >>>> Hi, >>>> I'm new in this mailing list and also using bioconductor. I'd >>>> appreciate your feedback on this: I have 622 files that correspond to >>>> 622 samples genotyped for the SNPs in the 5.0 SNPChip from Affymetrix. >>>> Each file consists of two columns of almost 500 K rows (plus 4 lines >>>> at the begining that I won't need). The number of rows are the same in >>>> every file. I would need to put all these files together, where the >>>> first column is common to all of them (SNP names) (so I just need it >>>> once in the big file). Once I have all the columns one after the other >>>> I would also need to paste a column with the chromosome number for >>>> each SNP (which is in another file, just this info alone). Do you know >>>> if there's any way to do this with Bioconductor?. >>>> >>>> Thank you! >>>> >>>> Laura >>>> >>>> _______________________________________________ >>>> Bioconductor mailing list >>>> Bioconductor at stat.math.ethz.ch >>>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>>> Search the archives: >>>> http://news.gmane.org/gmane.science.biology.informatics.conductor >>>> >>>> >>> >>> -- >>> David Carter >>> Facility Manager >>> London Regional Genomics Centre >>> Robarts Research Institute, Room 4.01 >>> PO Box 5015, 100 Perth Drive >>> London, Ontario, Canada, N6A 5K8 >>> >>> phone: 519-663-3253 >>> fax: 519-663-3037 >>> >>> dcarter at robarts.ca >>> http://www.lrgc.ca >>> >>> >>> >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor > >
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Such files do exceed the capabilities of most machines. One way I helped someone with a similar problem was to hack a script (Python or Perl come to my mind for such jobs, but it is possible to implement it in R if you like) that read the files as byte streams rather than line per line. This way it run with a minimal memory footprint (and will on Microsoft Windows... if the resulting file size does not exceed the capabilities of the OS). L. On Fri, 2008-11-07 at 13:38 -0500, Laura Rodriguez Murillo wrote: > Benilton, > Thank you. Unfortunately, the paste command doesn't work with these > big files. Does this only work with R under unix or is it possible in > windows?. Otherwise, I'll try with R when I get back to the unix > machine. > > Laura > > 2008/11/7 Benilton Carvalho <bcarvalh at="" jhsph.edu="">: > > Laura, > > > > if you're running *NIX, can't you just use the bash command "paste"? > > > > if you really want to use R, assume you have names of your files in the > > variable "files", then something like: > > > > ## This goes in R and assumes you're running *NIX > > cmd <- paste("paste", paste(files, collapse=" "), "> output.txt") > > system(cmd) > > > > later, you can just get rid of the first 4 lines of output.txt. > > > > b > > > > On Nov 7, 2008, at 3:04 PM, Laura Rodriguez Murillo wrote: > > > >> David, > >> > >> Thank you for your reply. I had tried with this software but it > >> doesn't recognize my files, it looks as it doesn't like .txt files. > >> Any idea? > >> > >> Laura > >> > >> 2008/11/6 David Carter <dcarter at="" robarts.ca="">: > >>> > >>> Hi Laura, > >>> Affymetrix has a free tool (free and easy to download) called Genotyping > >>> Console that will export 1 file for all your samples with SNPs on rows > >>> and > >>> samples on columns. I haven't tried it with 622 samples though... > >>> Sincerely, > >>> David Carter > >>> > >>> > >>> Laura Rodriguez Murillo wrote: > >>>> > >>>> Hi, > >>>> I'm new in this mailing list and also using bioconductor. I'd > >>>> appreciate your feedback on this: I have 622 files that correspond to > >>>> 622 samples genotyped for the SNPs in the 5.0 SNPChip from Affymetrix. > >>>> Each file consists of two columns of almost 500 K rows (plus 4 lines > >>>> at the begining that I won't need). The number of rows are the same in > >>>> every file. I would need to put all these files together, where the > >>>> first column is common to all of them (SNP names) (so I just need it > >>>> once in the big file). Once I have all the columns one after the other > >>>> I would also need to paste a column with the chromosome number for > >>>> each SNP (which is in another file, just this info alone). Do you know > >>>> if there's any way to do this with Bioconductor?. > >>>> > >>>> Thank you! > >>>> > >>>> Laura > >>>> > >>>> _______________________________________________ > >>>> Bioconductor mailing list > >>>> Bioconductor at stat.math.ethz.ch > >>>> https://stat.ethz.ch/mailman/listinfo/bioconductor > >>>> Search the archives: > >>>> http://news.gmane.org/gmane.science.biology.informatics.conductor > >>>> > >>>> > >>> > >>> -- > >>> David Carter > >>> Facility Manager > >>> London Regional Genomics Centre > >>> Robarts Research Institute, Room 4.01 > >>> PO Box 5015, 100 Perth Drive > >>> London, Ontario, Canada, N6A 5K8 > >>> > >>> phone: 519-663-3253 > >>> fax: 519-663-3037 > >>> > >>> dcarter at robarts.ca > >>> http://www.lrgc.ca > >>> > >>> > >>> > >> > >> _______________________________________________ > >> Bioconductor mailing list > >> Bioconductor at stat.math.ethz.ch > >> https://stat.ethz.ch/mailman/listinfo/bioconductor > >> Search the archives: > >> http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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Hi, Thank you for your email. As soon as I get some free time I'll try to learn some perl. See what I can do with these files. Laura 2008/11/7 laurent <lgautier at="" gmail.com="">: > Such files do exceed the capabilities of most machines. > > One way I helped someone with a similar problem was to hack a script > (Python or Perl come to my mind for such jobs, but it is possible to > implement it in R if you like) that read the files as byte streams > rather than line per line. > > This way it run with a minimal memory footprint (and will on Microsoft > Windows... if the resulting file size does not exceed the capabilities > of the OS). > > > L. > > On Fri, 2008-11-07 at 13:38 -0500, Laura Rodriguez Murillo wrote: >> Benilton, >> Thank you. Unfortunately, the paste command doesn't work with these >> big files. Does this only work with R under unix or is it possible in >> windows?. Otherwise, I'll try with R when I get back to the unix >> machine. >> >> Laura >> >> 2008/11/7 Benilton Carvalho <bcarvalh at="" jhsph.edu="">: >> > Laura, >> > >> > if you're running *NIX, can't you just use the bash command "paste"? >> > >> > if you really want to use R, assume you have names of your files in the >> > variable "files", then something like: >> > >> > ## This goes in R and assumes you're running *NIX >> > cmd <- paste("paste", paste(files, collapse=" "), "> output.txt") >> > system(cmd) >> > >> > later, you can just get rid of the first 4 lines of output.txt. >> > >> > b >> > >> > On Nov 7, 2008, at 3:04 PM, Laura Rodriguez Murillo wrote: >> > >> >> David, >> >> >> >> Thank you for your reply. I had tried with this software but it >> >> doesn't recognize my files, it looks as it doesn't like .txt files. >> >> Any idea? >> >> >> >> Laura >> >> >> >> 2008/11/6 David Carter <dcarter at="" robarts.ca="">: >> >>> >> >>> Hi Laura, >> >>> Affymetrix has a free tool (free and easy to download) called Genotyping >> >>> Console that will export 1 file for all your samples with SNPs on rows >> >>> and >> >>> samples on columns. I haven't tried it with 622 samples though... >> >>> Sincerely, >> >>> David Carter >> >>> >> >>> >> >>> Laura Rodriguez Murillo wrote: >> >>>> >> >>>> Hi, >> >>>> I'm new in this mailing list and also using bioconductor. I'd >> >>>> appreciate your feedback on this: I have 622 files that correspond to >> >>>> 622 samples genotyped for the SNPs in the 5.0 SNPChip from Affymetrix. >> >>>> Each file consists of two columns of almost 500 K rows (plus 4 lines >> >>>> at the begining that I won't need). The number of rows are the same in >> >>>> every file. I would need to put all these files together, where the >> >>>> first column is common to all of them (SNP names) (so I just need it >> >>>> once in the big file). Once I have all the columns one after the other >> >>>> I would also need to paste a column with the chromosome number for >> >>>> each SNP (which is in another file, just this info alone). Do you know >> >>>> if there's any way to do this with Bioconductor?. >> >>>> >> >>>> Thank you! >> >>>> >> >>>> Laura >> >>>> >> >>>> _______________________________________________ >> >>>> Bioconductor mailing list >> >>>> Bioconductor at stat.math.ethz.ch >> >>>> https://stat.ethz.ch/mailman/listinfo/bioconductor >> >>>> Search the archives: >> >>>> http://news.gmane.org/gmane.science.biology.informatics.conductor >> >>>> >> >>>> >> >>> >> >>> -- >> >>> David Carter >> >>> Facility Manager >> >>> London Regional Genomics Centre >> >>> Robarts Research Institute, Room 4.01 >> >>> PO Box 5015, 100 Perth Drive >> >>> London, Ontario, Canada, N6A 5K8 >> >>> >> >>> phone: 519-663-3253 >> >>> fax: 519-663-3037 >> >>> >> >>> dcarter at robarts.ca >> >>> http://www.lrgc.ca >> >>> >> >>> >> >>> >> >> >> >> _______________________________________________ >> >> Bioconductor mailing list >> >> Bioconductor at stat.math.ethz.ch >> >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> >> Search the archives: >> >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> > >> > >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > >
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Hi, Laura, In the meantime perhaps you could give this a try: https://stat.ethz.ch/pipermail/r-help/2006-September/112953.html Just us setwd("/this/is/my/folder") to move to the folder holing your files. I guess "c:/your/folder/here" must work on a Windows box. This doesn't solve the "extra four heading lines issue" though. But I am pretty sure if want be hard to cut they out prior to concatenate the files. Please, Laurent, have you this function reading files as byte streams already implemented in R? Thanks! Cheers, Ricardo Laura Rodriguez Murillo wrote: > Hi, > > Thank you for your email. As soon as I get some free time I'll try to > learn some perl. See what I can do with these files. > > Laura > > 2008/11/7 laurent <lgautier@gmail.com>: > >> Such files do exceed the capabilities of most machines. >> >> One way I helped someone with a similar problem was to hack a script >> (Python or Perl come to my mind for such jobs, but it is possible to >> implement it in R if you like) that read the files as byte streams >> rather than line per line. >> >> This way it run with a minimal memory footprint (and will on Microsoft >> Windows... if the resulting file size does not exceed the capabilities >> of the OS). >> >> >> L. >> >> On Fri, 2008-11-07 at 13:38 -0500, Laura Rodriguez Murillo wrote: >> >>> Benilton, >>> Thank you. Unfortunately, the paste command doesn't work with these >>> big files. Does this only work with R under unix or is it possible in >>> windows?. Otherwise, I'll try with R when I get back to the unix >>> machine. >>> >>> Laura >>> >>> 2008/11/7 Benilton Carvalho <bcarvalh@jhsph.edu>: >>> >>>> Laura, >>>> >>>> if you're running *NIX, can't you just use the bash command "paste"? >>>> >>>> if you really want to use R, assume you have names of your files in the >>>> variable "files", then something like: >>>> >>>> ## This goes in R and assumes you're running *NIX >>>> cmd <- paste("paste", paste(files, collapse=" "), "> output.txt") >>>> system(cmd) >>>> >>>> later, you can just get rid of the first 4 lines of output.txt. >>>> >>>> b >>>> >>>> On Nov 7, 2008, at 3:04 PM, Laura Rodriguez Murillo wrote: >>>> >>>> >>>>> David, >>>>> >>>>> Thank you for your reply. I had tried with this software but it >>>>> doesn't recognize my files, it looks as it doesn't like .txt files. >>>>> Any idea? >>>>> >>>>> Laura >>>>> >>>>> 2008/11/6 David Carter <dcarter@robarts.ca>: >>>>> >>>>>> Hi Laura, >>>>>> Affymetrix has a free tool (free and easy to download) called Genotyping >>>>>> Console that will export 1 file for all your samples with SNPs on rows >>>>>> and >>>>>> samples on columns. I haven't tried it with 622 samples though... >>>>>> Sincerely, >>>>>> David Carter >>>>>> >>>>>> >>>>>> Laura Rodriguez Murillo wrote: >>>>>> >>>>>>> Hi, >>>>>>> I'm new in this mailing list and also using bioconductor. I'd >>>>>>> appreciate your feedback on this: I have 622 files that correspond to >>>>>>> 622 samples genotyped for the SNPs in the 5.0 SNPChip from Affymetrix. >>>>>>> Each file consists of two columns of almost 500 K rows (plus 4 lines >>>>>>> at the begining that I won't need). The number of rows are the same in >>>>>>> every file. I would need to put all these files together, where the >>>>>>> first column is common to all of them (SNP names) (so I just need it >>>>>>> once in the big file). Once I have all the columns one after the other >>>>>>> I would also need to paste a column with the chromosome number for >>>>>>> each SNP (which is in another file, just this info alone). Do you know >>>>>>> if there's any way to do this with Bioconductor?. >>>>>>> >>>>>>> Thank you! >>>>>>> >>>>>>> Laura >>>>>>> >>>>>>> _______________________________________________ >>>>>>> Bioconductor mailing list >>>>>>> Bioconductor@stat.math.ethz.ch >>>>>>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>>>>>> Search the archives: >>>>>>> http://news.gmane.org/gmane.science.biology.informatics.conductor >>>>>>> >>>>>>> >>>>>>> >>>>>> -- >>>>>> David Carter >>>>>> Facility Manager >>>>>> London Regional Genomics Centre >>>>>> Robarts Research Institute, Room 4.01 >>>>>> PO Box 5015, 100 Perth Drive >>>>>> London, Ontario, Canada, N6A 5K8 >>>>>> >>>>>> phone: 519-663-3253 >>>>>> fax: 519-663-3037 >>>>>> >>>>>> dcarter@robarts.ca >>>>>> http://www.lrgc.ca >>>>>> >>>>>> >>>>>> >>>>>> >>>>> _______________________________________________ >>>>> Bioconductor mailing list >>>>> Bioconductor@stat.math.ethz.ch >>>>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>>>> Search the archives: >>>>> http://news.gmane.org/gmane.science.biology.informatics.conductor >>>>> >>>> >>> _______________________________________________ >>> Bioconductor mailing list >>> Bioconductor@stat.math.ethz.ch >>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >>> >> > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > > > -- Ricardo Rodríguez Your EPEC Network ICT Team [[alternative HTML version deleted]]
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WTW, you can use write.table to export results to a file: http://pbil.univ-lyon1.fr/library/base/html/write.table.html Greetings! Ricardo [Ricardo Rodriguez] Your EPEC Network ICT Team wrote: > Hi, Laura, > > In the meantime perhaps you could give this a try: > > https://stat.ethz.ch/pipermail/r-help/2006-September/112953.html > > Just us setwd("/this/is/my/folder") to move to the folder holing your > files. I guess "c:/your/folder/here" must work on a Windows box. > > This doesn't solve the "extra four heading lines issue" though. But I am > pretty sure if want be hard to cut they out prior to concatenate the files. > > Please, Laurent, have you this function reading files as byte streams > already implemented in R? Thanks! > > Cheers, > > Ricardo -- Ricardo Rodr?guez Your EPEC Network ICT Team
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On Fri, 2008-11-07 at 22:37 +0100, [Ricardo Rodriguez] Your EPEC Network ICT Team wrote: > Hi, Laura, > > In the meantime perhaps you could give this a try: > > https://stat.ethz.ch/pipermail/r-help/2006-September/112953.html > > Just us setwd("/this/is/my/folder") to move to the folder holing your > files. I guess "c:/your/folder/here" must work on a Windows box. > > This doesn't solve the "extra four heading lines issue" though. But I am > pretty sure if want be hard to cut they out prior to concatenate the files. > > Please, Laurent, have you this function reading files as byte streams > already implemented in R? Thanks! I don't. At the time, it was done in Perl (wishing it was Python), I think. It should be possible to do something similar using the R function "readChar()". > Cheers, > > Ricardo > > > Laura Rodriguez Murillo wrote: > > Hi, > > > > Thank you for your email. As soon as I get some free time I'll try to > > learn some perl. See what I can do with these files. > > > > Laura > > > > 2008/11/7 laurent <lgautier at="" gmail.com="">: > > > >> Such files do exceed the capabilities of most machines. > >> > >> One way I helped someone with a similar problem was to hack a script > >> (Python or Perl come to my mind for such jobs, but it is possible to > >> implement it in R if you like) that read the files as byte streams > >> rather than line per line. > >> > >> This way it run with a minimal memory footprint (and will on Microsoft > >> Windows... if the resulting file size does not exceed the capabilities > >> of the OS). > >> > >> > >> L. > >> > >> On Fri, 2008-11-07 at 13:38 -0500, Laura Rodriguez Murillo wrote: > >> > >>> Benilton, > >>> Thank you. Unfortunately, the paste command doesn't work with these > >>> big files. Does this only work with R under unix or is it possible in > >>> windows?. Otherwise, I'll try with R when I get back to the unix > >>> machine. > >>> > >>> Laura > >>> > >>> 2008/11/7 Benilton Carvalho <bcarvalh at="" jhsph.edu="">: > >>> > >>>> Laura, > >>>> > >>>> if you're running *NIX, can't you just use the bash command "paste"? > >>>> > >>>> if you really want to use R, assume you have names of your files in the > >>>> variable "files", then something like: > >>>> > >>>> ## This goes in R and assumes you're running *NIX > >>>> cmd <- paste("paste", paste(files, collapse=" "), "> output.txt") > >>>> system(cmd) > >>>> > >>>> later, you can just get rid of the first 4 lines of output.txt. > >>>> > >>>> b > >>>> > >>>> On Nov 7, 2008, at 3:04 PM, Laura Rodriguez Murillo wrote: > >>>> > >>>> > >>>>> David, > >>>>> > >>>>> Thank you for your reply. I had tried with this software but it > >>>>> doesn't recognize my files, it looks as it doesn't like .txt files. > >>>>> Any idea? > >>>>> > >>>>> Laura > >>>>> > >>>>> 2008/11/6 David Carter <dcarter at="" robarts.ca="">: > >>>>> > >>>>>> Hi Laura, > >>>>>> Affymetrix has a free tool (free and easy to download) called Genotyping > >>>>>> Console that will export 1 file for all your samples with SNPs on rows > >>>>>> and > >>>>>> samples on columns. I haven't tried it with 622 samples though... > >>>>>> Sincerely, > >>>>>> David Carter > >>>>>> > >>>>>> > >>>>>> Laura Rodriguez Murillo wrote: > >>>>>> > >>>>>>> Hi, > >>>>>>> I'm new in this mailing list and also using bioconductor. I'd > >>>>>>> appreciate your feedback on this: I have 622 files that correspond to > >>>>>>> 622 samples genotyped for the SNPs in the 5.0 SNPChip from Affymetrix. > >>>>>>> Each file consists of two columns of almost 500 K rows (plus 4 lines > >>>>>>> at the begining that I won't need). The number of rows are the same in > >>>>>>> every file. I would need to put all these files together, where the > >>>>>>> first column is common to all of them (SNP names) (so I just need it > >>>>>>> once in the big file). Once I have all the columns one after the other > >>>>>>> I would also need to paste a column with the chromosome number for > >>>>>>> each SNP (which is in another file, just this info alone). Do you know > >>>>>>> if there's any way to do this with Bioconductor?. > >>>>>>> > >>>>>>> Thank you! > >>>>>>> > >>>>>>> Laura > >>>>>>> > >>>>>>> _______________________________________________ > >>>>>>> Bioconductor mailing list > >>>>>>> Bioconductor at stat.math.ethz.ch > >>>>>>> https://stat.ethz.ch/mailman/listinfo/bioconductor > >>>>>>> Search the archives: > >>>>>>> http://news.gmane.org/gmane.science.biology.informatics.conductor > >>>>>>> > >>>>>>> > >>>>>>> > >>>>>> -- > >>>>>> David Carter > >>>>>> Facility Manager > >>>>>> London Regional Genomics Centre > >>>>>> Robarts Research Institute, Room 4.01 > >>>>>> PO Box 5015, 100 Perth Drive > >>>>>> London, Ontario, Canada, N6A 5K8 > >>>>>> > >>>>>> phone: 519-663-3253 > >>>>>> fax: 519-663-3037 > >>>>>> > >>>>>> dcarter at robarts.ca > >>>>>> http://www.lrgc.ca > >>>>>> > >>>>>> > >>>>>> > >>>>>> > >>>>> _______________________________________________ > >>>>> Bioconductor mailing list > >>>>> Bioconductor at stat.math.ethz.ch > >>>>> https://stat.ethz.ch/mailman/listinfo/bioconductor > >>>>> Search the archives: > >>>>> http://news.gmane.org/gmane.science.biology.informatics.conductor > >>>>> > >>>> > >>> _______________________________________________ > >>> Bioconductor mailing list > >>> Bioconductor at stat.math.ethz.ch > >>> https://stat.ethz.ch/mailman/listinfo/bioconductor > >>> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > >>> > >> > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor at stat.math.ethz.ch > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > > > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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