Thanks for the confirmation! cu Philipp On Sun, Nov 09, 2008 at 03:36:04PM -0500, Francois Pepin wrote: > Hi Philipp, > > yes, hgug4112a.db does apply to to 4x44k arrays (the F version). > > The differences between the 1x44k and the 4x44k arrays lie in the array > geometry, the control probes (the 4x44k has some extra ones), and the > position of probes*. > > The actual non-control probes have the same sequences, so they map to > the same genes. This means that the annotation package applies as well. > > Francois > > *: a few probes are also present a few places in the arrays, and I think > their number differs also. > > Philipp Pagel wrote: >> Hi! >> >> I have some data from Agilent G4112F whole human genome arrays. >> I would like to do some analysis of GO terms etc. and was >> wondering if the hgug4112a.db package still applies to the 'F' >> version. Looking at a few examples seems to suggeest that it does >> but it would be great if someone could confirm (or refute) this. >> >> cu >> Philipp >> > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Dr. Philipp Pagel Lehrstuhl f?r Genomorientierte Bioinformatik Technische Universit?t M?nchen Wissenschaftszentrum Weihenstephan 85350 Freising, Germany http://mips.gsf.de/staff/pagel