Oh, one last thing: there is the following statement in the MATLAB code. % Copyright (c) Brendan J. Frey and Delbert Dueck (2006). This % software may be freely used and distributed for % non-commercial purposes. L. Laurent Gautier wrote: > Peter, I meant "Peder" > Since the algorithm is not specific to bioinformatics, you may have more > answers by asking about it on the r-help mailing list. > > I also see that the authors provide MATLAB code. Porting it, preferably > with the handling of sparse matrices since the package Matrix is > becoming a "recommended package" with R-2.8, should also be possible > (from a quick glance, the code is looking documented and nicely formatted). > > > L. > > > Peder Worning wrote: >> Dear Bioconductor list, >> >> >> >> I am working with expression data and wonder if there is an R >> implementation of the Affinity propagation clustering algorithm >> published by Frey and Dueck in Science February 2007. >> Frey and Dueck 2007 Science vol 315, p 972-976 >> >> >> >> Sincerely yours >> >> >> >> Peder Worning >> >> >> >> Best regards >> Exiqon A/S >> >> >> >> >> >> Peder Worning, Ph.D. >> >> >> >> >> Senior Scientist >> >> Biomarker Discovery >> >> Telephone: +45 45650457 Telefax: +45 45661888 E-mail: pwo at exiqon.com >> >> >> >> >> Bygstubben 3 DK-2950 Vedbaek Denmark www.exiqon.com >> <http: www.exiqon.com=""/> >> The information transmitted is intended only for the per...{{dropped:14}} >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor > > >