Entering edit mode
Nishant Gopalakrishnan
▴
340
@nishant-gopalakrishnan-3253
Last seen 10.2 years ago
Dear Francesco,
The recommended size for software packages is less than 2 MB on disk
as
you noted from
http://wiki.fhcrc.org/bioc/Package_Guidelines#size-requirements
Data files in the range of 10 ~ 30 MB will need to be built into a
separate data package and would typically go into our experimental
data
package repository or into the Metadata category if its related to
Annotation, CDF and Probe data
http://bioconductor.org/download/index.html
A typical user of your software package would probably not need the
large data files for their application and hence we would
like to maintain them as separate packages.
If you are planning to build an annotation data package please get in
touch with Marc Carlson (mcarlson at fhcrc.org) and he should be able
to
guide you through the process.
If your are building an experiment data package, I can help you put
one
together.
Once you have created your packages, please register at
http://tracker.fhcrc.org/roundup/bioc_submit/index
and create a new issue on the tracker to submit your package
Nishant
(I am forwarding the response to your question to the Bioconductor
mailing list so that this information is available to other people
searching the mailing list archives)
Quoting Francesco Favero <francesco.favero.bioc at="" gmail.com="">:
> Dear Nishant,
>
> I have done a package to cross the miRNA and gene expression
microarray
> data, I would like to upload it but it 30 Mb big instead of the 2 Mb
> required from the "Package Guidelines". It contains 6 different
databases of
> predicted or validated miRNA targets, for this is so big. Should I
upload it
> anyway?
>
> If you want an overview of the package, I will attach the package
vignette.
>
> Best regards
>
> Francesco
>