Entering edit mode
Ashwin Kumar
▴
90
@ashwin-kumar-3410
Last seen 10.0 years ago
Hello group,
I have a problem in my bioconductor ,, I
cannot
install specific packages such as GO & KEGG, other ones like
gPlots,affydata,limma etc are installed with no issues I am pasting
the
workspace for my installation procedure along with the error. If
anyone
could advice a solution it will be very helpfull for my work here....
> source("http://bioconductor.org/biocLite.R")
Warning messages:
1: In safeSource() : Redefining biocinstall
2: In safeSource() : Redefining biocinstallPkgGroups
3: In safeSource() : Redefining biocinstallRepos
> biocLite("KEGG")
Running biocinstall version 2.4.10 with R version 2.9.0
Your version of R requires version 2.4 of Bioconductor.
Warning in install.packages(pkgs = pkgs, repos = repos, dependencies =
dependencies, :
argument 'lib' is missing: using
'/home/mlscub1/R/i486-pc-linux-gnu-library/2.9'
Warning message:
In getDependencies(pkgs, dependencies, available, lib) :
package KEGG is not available
Thanfully
A.Ashwin
MLSC
Manipal Univeersity
INDIA
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