I have found dealing with the Affy 1.0 ST chips a bit difficult and
have yet to get our systems mavens to get
xps functional on our big computer. I was wondering whether Illumina
chips present similar challenges
and how easy it is to install and use Bioconductor packages in the
Illumina world. Is this easy or hard?
Sincerely,
Tom
On Mon, Jun 8, 2009 at 6:39 PM, Thomas
Hampton<thomas.h.hampton at="" dartmouth.edu=""> wrote:
> I have found dealing with the Affy 1.0 ST chips a bit difficult and
have yet
> to get our systems mavens to get
> xps functional on our big computer. I was wondering whether Illumina
chips
> present similar challenges
> and how easy it is to install and use Bioconductor packages in the
Illumina
> world. Is this easy or hard?
The lumi and beadarray packages are both illumina-centric.
Sean
Dear Tom
If you need any help with xps, please let me know.
What do you mean with "get xps functional on our big computer"?
Do you have problems installing ROOT?
Best regards
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l: cstrato at aon.at
_._._._._._._._._._._._._._._._._._
Thomas Hampton wrote:
> I have found dealing with the Affy 1.0 ST chips a bit difficult and
> have yet to get our systems mavens to get
> xps functional on our big computer. I was wondering whether Illumina
> chips present similar challenges
> and how easy it is to install and use Bioconductor packages in the
> Illumina world. Is this easy or hard?
>
> Sincerely,
>
> Tom
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives:
> http://news.gmane.org/gmane.science.biology.informatics.conductor
>
>
Christian,
I look forward to getting ROOT and xps going, but I ran into
some issues on our Sparc-based linux system, so I decided
to call in the cavalry and get help from our systems administrators.
Working with other people adds another layer of complexity. I
am sure they will get it sorted out.
Thanks for inquiring.
Tom
On Jun 9, 2009, at 12:00 PM, cstrato wrote:
> Dear Tom
>
> If you need any help with xps, please let me know.
> What do you mean with "get xps functional on our big computer"?
> Do you have problems installing ROOT?
>
> Best regards
> Christian
> _._._._._._._._._._._._._._._._._._
> C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
> V.i.e.n.n.a A.u.s.t.r.i.a
> e.m.a.i.l: cstrato at aon.at
> _._._._._._._._._._._._._._._._._._
>
>
> Thomas Hampton wrote:
>> I have found dealing with the Affy 1.0 ST chips a bit difficult
>> and have yet to get our systems mavens to get
>> xps functional on our big computer. I was wondering whether
>> Illumina chips present similar challenges
>> and how easy it is to install and use Bioconductor packages in the
>> Illumina world. Is this easy or hard?
>>
>> Sincerely,
>>
>> Tom
>>
>> _______________________________________________
>> Bioconductor mailing list
>> Bioconductor at stat.math.ethz.ch
>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>> Search the archives: http://news.gmane.org/
>> gmane.science.biology.informatics.conductor
>>
>>
>
Dear Tom
Thank you for your answer, I am sure the sysadmins will solve the
problem.
FYI, ROOT has binaries for Sparc-Solaris, but for Linux you need to
compile it from source. In case there are any problems, the ROOT
developers are very responsive to questions.
Best regards
Christian
Thomas Hampton wrote:
> Christian,
>
> I look forward to getting ROOT and xps going, but I ran into
> some issues on our Sparc-based linux system, so I decided
> to call in the cavalry and get help from our systems administrators.
> Working with other people adds another layer of complexity. I
> am sure they will get it sorted out.
>
> Thanks for inquiring.
>
> Tom
> On Jun 9, 2009, at 12:00 PM, cstrato wrote:
>
>> Dear Tom
>>
>> If you need any help with xps, please let me know.
>> What do you mean with "get xps functional on our big computer"?
>> Do you have problems installing ROOT?
>>
>> Best regards
>> Christian
>> _._._._._._._._._._._._._._._._._._
>> C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
>> V.i.e.n.n.a A.u.s.t.r.i.a
>> e.m.a.i.l: cstrato at aon.at
>> _._._._._._._._._._._._._._._._._._
>>
>>
>> Thomas Hampton wrote:
>>> I have found dealing with the Affy 1.0 ST chips a bit difficult
and
>>> have yet to get our systems mavens to get
>>> xps functional on our big computer. I was wondering whether
Illumina
>>> chips present similar challenges
>>> and how easy it is to install and use Bioconductor packages in the
>>> Illumina world. Is this easy or hard?
>>>
>>> Sincerely,
>>>
>>> Tom
>>>
>>> _______________________________________________
>>> Bioconductor mailing list
>>> Bioconductor at stat.math.ethz.ch
>>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>>> Search the archives:
>>> http://news.gmane.org/gmane.science.biology.informatics.conductor
>>>
>>>
>>
>
>
>