I've committed a major bug fix to the treat() function of the limma package. Users of this function should re-install limma 2.18.2 or 2.19.2 from Bioconductor. I've introduced a new function topTreat(). Here's an example calling sequence: fit <- lmFit(y, design) fit <- treat(fit, lfc=0.1) topTreat(fit, coef=2) Best wishes Gordon

Nice. Thanks for the quick fix. I will be waiting for the builds to appear on the bioconductor repositories. L. > I've committed a major bug fix to the treat() function of the limma > package. Users of this function should re-install limma 2.18.2 or 2.19.2 > from Bioconductor. > > I've introduced a new function topTreat(). Here's an example calling > sequence: > > fit <- lmFit(y, design) > fit <- treat(fit, lfc=0.1) > topTreat(fit, coef=2) > > Best wishes > Gordon > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor