using DAVID
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@carolmtzibtunammx-3538
Last seen 9.7 years ago
Hi everyone! Have someone of you used the Database for Annotation, Visualization and Integrated Discovery (DAVID) software? If the answer is Yes or No, do you have positive or negative comments about using it to add more "useful" information to my gene lists, and also for doing clustering? This is not a DAVID'survey :) It would help so much. Thank you in advance Carol ---------------------------------------------------------------- Este mensaje fue enviado desde el servidor Webmail del Instituto de Biotecnologia.
Annotation Annotation • 908 views
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yemi yomi ▴ 50
@yemi-yomi-2895
Last seen 9.7 years ago
Hi Carol, Hi everyone! Have someone of you used the Database for Annotation, Visualization and Integrated Discovery (DAVID) software? If the answer is Yes or No, do you have positive or negative comments about using it to add more "useful" information to my gene lists, and also for doing clustering? --- On Thu, 6/25/09, carolmtz@ibt.unam.mx <carolmtz@ibt.unam.mx> wrote:  Yes DAVID is good for mining your gene list for categories such as GO, KEGG pathways and for functional clustering. However, you will probably need to critically examine the results you get as it the software tends to 'output' other genes not included in your gene list as well. Yemi From: carolmtz@ibt.unam.mx <carolmtz@ibt.unam.mx> Subject: [BioC] using DAVID To: bioconductor@stat.math.ethz.ch Date: Thursday, June 25, 2009, 12:36 PM This is not a DAVID'survey :) It would help so much. Thank you in advance Carol ---------------------------------------------------------------- Este mensaje fue enviado desde el servidor Webmail del Instituto de Biotecnologia. _______________________________________________ Bioconductor mailing list Bioconductor@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor [[alternative HTML version deleted]]
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Personally, I have try the sofrware and I wans't able to get the correct information that I want and the support from David haven't respond yet... More then one month later... But I found everything I need on R. Selon yemi yomi <dejavuwide at="" yahoo.com="">, 25.06.2009: > Hi Carol, > > > > > Hi everyone! > > Have someone of you used the Database for Annotation, Visualization and > Integrated Discovery (DAVID) software? > > If the answer is Yes or No, do you have positive or negative comments about > using it to add more "useful" information to my gene lists, and also for > doing > clustering? > ? > --- On Thu, 6/25/09, carolmtz at ibt.unam.mx <carolmtz at="" ibt.unam.mx=""> wrote: > ? > ?Yes DAVID is good for mining your gene list for categories such as GO, KEGG > pathways and for functional clustering. However, you will probably need to > critically examine the results you get as it the software tends to 'output' > other genes not included in?your gene list as well. > ? > Yemi > ? > ? > > From: carolmtz at ibt.unam.mx <carolmtz at="" ibt.unam.mx=""> > Subject: [BioC] using DAVID > To: bioconductor at stat.math.ethz.ch > Date: Thursday, June 25, 2009, 12:36 PM > > > > > This is not a DAVID'survey :) > > It would help so much. > > Thank you in advance > > Carol > > ---------------------------------------------------------------- > Este mensaje fue enviado desde el servidor Webmail del Instituto de > Biotecnologia. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > > [[alternative HTML version deleted]] > >
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@sean-davis-490
Last seen 4 months ago
United States
On Thu, Jun 25, 2009 at 3:36 PM, <carolmtz@ibt.unam.mx> wrote: > > > Hi everyone! > > Have someone of you used the Database for Annotation, Visualization and > Integrated Discovery (DAVID) software? > > If the answer is Yes or No, do you have positive or negative comments about > using it to add more "useful" information to my gene lists, and also for > doing > clustering? > Much of the functionality of DAVID is available via bioconductor tools, directly. That said, note the addition of a package in the current development repository, DAVIDquery. Sean [[alternative HTML version deleted]]
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