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mauede@alice.it
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@mauedealiceit-3511
Last seen 10.2 years ago
I am staring at the miRNAs and mature miRNAs FASTA files I downloaded
from one of the BioMart database
The file format is as follows:
>hsa-miR-26a MIMAT0000082 Homo sapiens miR-26a
UUCAAGUAAUCCAGGAUAGGCU
>hsa-miR-26b MIMAT0000082 Homo sapiens miR-26b
UUCAAGUAAUUCAGGAUAGGU
>hsa-miR-27a MIMAT0000084 Homo sapiens miR-27a
UUCACAGUGGCUAAGUUCCGC
>hsa-miR-28-5p MIMAT0000085 Homo sapiens miR-28-5p
AAGGAGCUCACAGUCUAUUGAG
So far, for each miRNA identifier, from the FASTA files above
mentioned, I looked for it in the Excel file I downloaded
from miRecords to read out the gene identifiers that link a single
validated miRNA to its target genes, and get
the correspondent 3utr sequences.
My questions are:
1) I'd like to double-check that the miRNAs in the FASTA files above
mentioned are
really VALIDATED not just predicted. Is that true ?
2) Can I extract the target-genes 3UTR sequence providing BioMart
functions with the identifiers present
in the FASTA files above mentioned ("MIMAT0000082",
"MIMAT0000082", "MIMAT0000085", and so on ...)
What is the attribute name for such identifiers?
Thank you in advance.
Regards,
Maura
tutti i telefonini TIM!
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