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jrwang@itri.org.tw
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@jrwangitriorgtw-3946
Last seen 10.2 years ago
I am currently working on some microRNA experiments. I would like to
find the relation between microRNA and predicted targets from
targetscan and miRanda. To do it from scratch will be last choice. I
look the currently available packages. Two packages, RmiR and
microRNA, seems fitting my purpose. However, there are a few
questions after I use the packages.
1. What is the version of mirbase used in most current microRNA
package?
2. Similar to question 1, what is the version of data from various
resources used in RmiR? Is there a way to find out?
Thanks
> sessionInfo()
R version 2.10.1 (2009-12-14)
i386-pc-mingw32
locale:
[1] LC_COLLATE=Chinese_Taiwan.950 LC_CTYPE=Chinese_Taiwan.950
LC_MONETARY=Chinese_Taiwan.950 LC_NUMERIC=C
LC_TIME=Chinese_Taiwan.950
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] microRNA_1.4.0 Rlibstree_0.3-2 Biostrings_2.14.12
IRanges_1.4.11 RmiR_1.2.0 RSVGTipsDevice_1.0-1
RmiR.Hs.miRNA_1.0.6 RSQLite_0.8-3 DBI_0.2-5
loaded via a namespace (and not attached):
[1] AnnotationDbi_1.8.1 Biobase_2.6.1
Weihsin Wang, Ph.D.
Bioinformatics Core Lab.,
Biomedical Engineering Research Lab.,
Industrial Technology Research Institute
TEL:886-3-5913689
FAX: 886-3-5820445
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