Thanks! Sabrina On Wed, Mar 10, 2010 at 12:18 PM, Patrick Aboyoun <paboyoun@fhcrc.org>wrote: > Sabrina, > You have unfortunately "crossed the streams" by mixing the IRanges package > from BioC 2.6 with R 2.10 for which BioC 2.5 packages are supported. If you > want to use the IRanges package from BioC 2.6, you need first to upgrade to > R-devel, then use biocLite to reinstall the BioC packages you are using. > > > Cheers, > Patrick > > > > > On 3/10/10 6:24 AM, sabrina s wrote: > >> Hi, all: >> In order to solve some problems I have with findOverlaps results, I >> installed IRanges_1.5.56 version from .zip file. After that, I can not >> load >> rtracklayer , I have the following error: >> >> >> >>> library(rtracklayer) >>> >>> >> library(rtracklayer) >> Loading required package: RCurl >> Loading required package: bitops >> Error in sub("([^-]+)_.*", "\\1", info$pkgname) : >> 7 arguments passed to .Internal(sub) which requires 8 >> Error : unable to load R code in package 'Biostrings' >> Error: package/namespace load failed for 'rtracklayer' >> >> >> R version 2.10.1 (2009-12-14) >> i386-pc-mingw32 >> >> locale: >> [1] LC_COLLATE=English_United States.1252 >> [2] LC_CTYPE=English_United States.1252 >> [3] LC_MONETARY=English_United States.1252 >> [4] LC_NUMERIC=C >> [5] LC_TIME=English_United States.1252 >> >> attached base packages: >> [1] stats graphics grDevices utils datasets methods base >> >> other attached packages: >> [1] IRanges_1.5.56 RCurl_1.3-1 bitops_1.0-4.1 >> >> loaded via a namespace (and not attached): >> [1] Biobase_2.6.1 XML_2.6-0 >> >> >>> >>> >> >> Can any one tell me how to solve this problem? >> >> Thanks! >> >> >> >> >> > > -- Sabrina [[alternative HTML version deleted]]