Hi Saroj, Many thanks for your answer. Your pdf idea works very well though it kicks out the key, even when I write key=T. Unfortuantely though, I cannot switch off the drawing dendogram (though I want the dendogram to be calculated and the genes to be ordered accordingly). I get following failure message: Warning messages: 1: In plot.window(...) : "dendogram" is not a graphical parameter 2: In plot.xy(xy, type, ...) : "dendogram" is not a graphical parameter 3: In title(...) : "dendogram" is not a graphical parameter Any ideas for these 2 issues? Your ideas are very appreciated, Daniela

Hi Daniela, I think the message you are getting is due to a typo in "dendrogram" (missing the first r). Changing that should solve that issue. Best, Melanie On Mar 24, 2010, at Wed, Mar 24, 2010, 1:39 PM, Daniela wrote: > Hi Saroj, > Many thanks for your answer. > Your pdf idea works very well though it kicks out the key, > even when I write key=T. > > Unfortuantely though, I cannot switch off the drawing > dendogram (though I want > the dendogram to be calculated and the genes to be ordered > accordingly). I get > following failure message: > Warning messages: > 1: In plot.window(...) : "dendogram" is not a graphical parameter > 2: In plot.xy(xy, type, ...) : "dendogram" is not a graphical parameter > 3: In title(...) : "dendogram" is not a graphical parameter > > Any ideas for these 2 issues? > Your ideas are very appreciated, > Daniela > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor

Hi Daniela: Glad that it helped. Daniela wrote: > Hi Saroj, > Many thanks for your answer. > Your pdf idea works very well though it kicks out the key, > even when I write key=T. > I am just guessing that you used keysize parameter (perhaps the same value I used, i.e., 0.1?) If so, kick it out of the function. If the problem persists, then send the exact code that you are using. Best, Saroj > Unfortuantely though, I cannot switch off the drawing > dendogram (though I want > the dendogram to be calculated and the genes to be ordered > accordingly). I get > following failure message: > Warning messages: > 1: In plot.window(...) : "dendogram" is not a graphical parameter > 2: In plot.xy(xy, type, ...) : "dendogram" is not a graphical parameter > 3: In title(...) : "dendogram" is not a graphical parameter > > Any ideas for these 2 issues? > Your ideas are very appreciated, > Daniela > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > >