seqselect function in IRanges not working
2
0
Entering edit mode
Fahim Md ▴ 250
@fahim-md-4018
Last seen 9.7 years ago
Hi I was playing with package IRanges and I think 'seqselect()' is somehow not working. > seqselect(xSnippet, start = c(6, 1), end = c(10, 5)) Error: could not find function "seqselect" > seqSelect(xSnippet, start = c(6, 1), end = c(10, 5)) Error: could not find function "seqSelect" > help('seqselect') No documentation for 'seqselect' in specified packages and libraries: > ??seqselect No help files found with alias or concept or title matching ‘seqselect’ using fuzzy matching. > Thanks for building such a nice package. Regards -- Fahim Mohammad Graduate student, Univ of Louisville Louisville, KY, USA Ph: +1-502-409-1167 [[alternative HTML version deleted]]
IRanges IRanges • 1.2k views
ADD COMMENT
0
Entering edit mode
Patrick Aboyoun ★ 1.6k
@patrick-aboyoun-6734
Last seen 9.6 years ago
United States
Fahim, I changed the subject of your e-mail to match what you have experienced. There are two reasons why you did not find the seqselect symbol: 1) The IRanges package wasn't loaded onto your search patch 2) You are using an older version of IRanges the predates the inclusion of seqselect Could you send the results of sessionInfo()? This will help us determine which of the two categories you fell into. Cheers, Patrick On 5/6/10 8:16 PM, Fahim Md wrote: > Hi > I was playing with package IRanges and I think 'seqselect()' is somehow not > working. > > >> seqselect(xSnippet, start = c(6, 1), end = c(10, 5)) >> > Error: could not find function "seqselect" > >> seqSelect(xSnippet, start = c(6, 1), end = c(10, 5)) >> > Error: could not find function "seqSelect" > >> help('seqselect') >> > No documentation for 'seqselect' in specified packages and libraries: > >> ??seqselect >> > No help files found with alias or concept or title matching 'seqselect' > using fuzzy matching. > >> > > Thanks for building such a nice package. > Regards > > > > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor [[alternative HTML version deleted]]
ADD COMMENT
0
Entering edit mode
> seqselect(xSnippet, start = c(6, 1), end = c(10, 5)) Error: could not find function "seqselect" > sessionInfo() R version 2.9.2 (2009-08-24) x86_64-pc-linux-gnu locale: LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US .UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_N AME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTI FICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] IRanges_1.2.3 > On Fri, May 7, 2010 at 1:09 PM, Patrick Aboyoun <paboyoun@fhcrc.org> wrote: > Fahim, > I changed the subject of your e-mail to match what you have experienced. > There are two reasons why you did not find the seqselect symbol: > > 1) The IRanges package wasn't loaded onto your search patch > 2) You are using an older version of IRanges the predates the inclusion of > seqselect > > Could you send the results of sessionInfo()? This will help us determine > which of the two categories you fell into. > > > Cheers, > Patrick > > > > On 5/6/10 8:16 PM, Fahim Md wrote: > > Hi > I was playing with package IRanges and I think 'seqselect()' is somehow not > working. > > > > seqselect(xSnippet, start = c(6, 1), end = c(10, 5)) > > > Error: could not find function "seqselect" > > > seqSelect(xSnippet, start = c(6, 1), end = c(10, 5)) > > > Error: could not find function "seqSelect" > > > help('seqselect') > > > No documentation for 'seqselect' in specified packages and libraries: > > > ??seqselect > > > No help files found with alias or concept or title matching ‘seqselect’ > using fuzzy matching. > > > Thanks for building such a nice package. > Regards > > > > > _______________________________________________ > Bioconductor mailing listBioconductor@stat.math.ethz.chhttps://stat. ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > > > -- Mohammad Fahim Louisville, KY, USA Ph: +1-502-409-1167 [[alternative HTML version deleted]]
ADD REPLY
0
Entering edit mode
@james-w-macdonald-5106
Last seen 29 minutes ago
United States
sessionInfo() Fahim Md wrote: > Hi > I was playing with package IRanges and I think 'seqselect()' is somehow not > working. > >> seqselect(xSnippet, start = c(6, 1), end = c(10, 5)) > Error: could not find function "seqselect" >> seqSelect(xSnippet, start = c(6, 1), end = c(10, 5)) > Error: could not find function "seqSelect" >> help('seqselect') > No documentation for 'seqselect' in specified packages and libraries: >> ??seqselect > No help files found with alias or concept or title matching ?seqselect? > using fuzzy matching. > > > Thanks for building such a nice package. > Regards > > > > -------------------------------------------------------------------- ---- > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician Douglas Lab University of Michigan Department of Human Genetics 5912 Buhl 1241 E. Catherine St. Ann Arbor MI 48109-5618 734-615-7826 ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues
ADD COMMENT

Login before adding your answer.

Traffic: 790 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6