Reg: plotting 3d image of pca analysis
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Rohit Farmer ▴ 170
@rohit-farmer-3954
Last seen 10.2 years ago
hi all i did a pca analysis using made4 ord function and now want to make a 3d plot for my result does anyone knows how to do it .... commands used pca.res<- ord(eset.s, "pca") plot(pca.res) # it plots a simple two dimensional plot that too three plots in one screen thanks Rohit -- Rohit Farmer M.Tech Bioinformatics Department of Computational Biology and Bioinformatics Jacob School of Biengineering and Biotechnology Sam Higginbottom Institute of Agriculture, Technology and Sciences (Formerly known as Allahabad Agricultural Institute - Deemed University) Allahabad, UP, INDIA - 211 007 Ph. No. 9839845093, 9415261403 e-Mail rohit.farmer@gmail.com Blog http://rohitsspace.blogspot.com [[alternative HTML version deleted]]
made4 made4 • 1.3k views
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Steve Shen ▴ 330
@steve-shen-3743
Last seen 10.2 years ago
package scatterplot3D. On Wed, Jun 2, 2010 at 12:03 PM, Rohit Farmer <rohit.farmer@gmail.com>wrote: > hi all i did a pca analysis using made4 ord function and now want to make a > 3d plot for my result does anyone knows how to do it .... > > commands used > > pca.res<- ord(eset.s, "pca") > plot(pca.res) # it plots a simple two dimensional plot that too three > plots in one screen > > thanks > > Rohit > -- > Rohit Farmer > M.Tech Bioinformatics > Department of Computational Biology and Bioinformatics > Jacob School of Biengineering and Biotechnology > Sam Higginbottom Institute of Agriculture, Technology and Sciences > (Formerly known as Allahabad Agricultural Institute - Deemed University) > Allahabad, UP, INDIA - 211 007 > Ph. No. 9839845093, 9415261403 > e-Mail rohit.farmer@gmail.com > Blog http://rohitsspace.blogspot.com > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
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thats cool Steve and i installed the scatterplot3d also ... but this package is huge ... and m new to R so if i can get some straight commands it will be really helpful ... On Wed, Jun 2, 2010 at 9:41 PM, Steve Shen <sshen@bu.edu> wrote: > package scatterplot3D. > > On Wed, Jun 2, 2010 at 12:03 PM, Rohit Farmer <rohit.farmer@gmail.com>wrote: > >> hi all i did a pca analysis using made4 ord function and now want to make >> a >> 3d plot for my result does anyone knows how to do it .... >> >> commands used >> >> pca.res<- ord(eset.s, "pca") >> plot(pca.res) # it plots a simple two dimensional plot that too three >> plots in one screen >> >> thanks >> >> Rohit >> -- >> Rohit Farmer >> M.Tech Bioinformatics >> Department of Computational Biology and Bioinformatics >> Jacob School of Biengineering and Biotechnology >> Sam Higginbottom Institute of Agriculture, Technology and Sciences >> (Formerly known as Allahabad Agricultural Institute - Deemed University) >> Allahabad, UP, INDIA - 211 007 >> Ph. No. 9839845093, 9415261403 >> e-Mail rohit.farmer@gmail.com >> Blog http://rohitsspace.blogspot.com >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor@stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > -- Rohit Farmer M.Tech Bioinformatics Department of Computational Biology and Bioinformatics Jacob School of Biengineering and Biotechnology Sam Higginbottom Institute of Agriculture, Technology and Sciences (Formerly known as Allahabad Agricultural Institute - Deemed University) Allahabad, UP, INDIA - 211 007 Ph. No. 9839845093, 9415261403 e-Mail rohit.farmer@gmail.com Blog http://rohitsspace.blogspot.com [[alternative HTML version deleted]]
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