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Eric Blanc
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10
@eric-blanc-4116
Last seen 10.2 years ago
I have a workspace which contains a PLMset object (from affyPLM
package). When I read it, and then load the library affyPLM, I cannot
visualise the residuals image, while if I load the library first,
followed by the workspace, the image displays fine. More precisely:
library( affyPLM )
load( "./Image.RData" )
image( Pset, which=1, type="resids" )
works fine, while
load( "./Image.RData" )
library( affyPLM )
image( Pset, which=1, type="resids" )
returns the error:
Error in image.default(Pset, which = 1, type = "resids") :
argument must be matrix-like
The function existsMethod( "image", "PLMset" ) returns TRUE in the
first case, and FALSE in the second, while the function
hasMethod( "image", "PLMset" ) returns TRUE in both cases.
My question is: is there a way to force the display of the image in
cases where I had loaded the workspace before the library ?
Many thanks,
Eric
PS:
> sessionInfo()
R version 2.11.0 (2010-04-22)
x86_64-apple-darwin9.8.0
locale:
[1] C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] affyPLM_1.24.0 preprocessCore_1.10.0 gcrma_2.20.0
[4] affy_1.26.1 Biobase_2.8.0
loaded via a namespace (and not attached):
[1] Biostrings_2.16.2 IRanges_1.6.4 affyio_1.16.0
splines_2.11.0
--
Dr Eric Blanc
Lecturer in Bioinformatics
Tel: +44 (0)20 7848 6532
MRC Centre for Developmental Neurobiology
King's College London
New Hunt's House, Room 4.10B
Guy's Hospital Campus
London SE1 1UL