Entering edit mode
Jeremiah H. Savage
▴
110
@jeremiah-h-savage-4102
Last seen 10.3 years ago
Hi,
I'm wondering what is the best way to get expression data from a GEO
entry with the Affymetrix Exon ST platform?
For example, I've tried
> gse9342 <- getGEO("GSE9342")
> head(exprs(gsedat9342[[1]]))
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
^^^ no values are given.
I've also tried parseGEO() -> GSMList() on downloaded .soft files
which use GPL5188, but these also do not contain expression data.
Any ideas?
Thank you,
Jeremiah
