Entering edit mode
@jtleekuwashingtonedu-612
Last seen 10.6 years ago
Hello...
I have been trying to get the XML and MAGEML packages from
Bioconductor to run on Mac OS X. When I use the call
getBioC("analyses"), when it comes to the XML package I get the
following output.
[1] "Installing XML"
* Installing *source* package 'XML' ...
checking for gcc... gcc
checking for C compiler default output... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for xml-config... no
checking for xml2-config... no
Cannot find xml2-config
ERROR: configuration failed for package 'XML'
** Removing '/Applications/StartR.app/RAqua.app/Contents/library/XML'
Warning message:
Installation of package XML had non-zero exit status in:
installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce)
Does anyone know what I need to do to get xml2-config set up? Or is
that really the problem? Thank you very much for your help.
Jeffrey Leek
Graduate Student
University of Washington
Department of Biostatistics
jtleek@u.washington.edu