Anyone thinking of expanding rsbml capability of reading SBML versions?
1
0
Entering edit mode
pj dias ▴ 60
@pj-dias-4324
Last seen 8.4 years ago
Hi, I'm a new user of bioconductor and I'm starting to work with rsbml package. The problem is that this package only recognizes currently level=2, version=1, so I'm sending this message if there is any possibility to import to R SBML files with higher versions. Pj [[alternative HTML version deleted]]
• 1.0k views
ADD COMMENT
0
Entering edit mode
@michael-lawrence-3846
Last seen 3.0 years ago
United States
It should support up to level=2, version=3. If you see something documented to the contrary, please let me know. It's true that it does not support level=3, but there's only so much time in a day. Thanks, Michael On Wed, Oct 27, 2010 at 3:25 AM, pj dias <pjdias87@gmail.com> wrote: > Hi, I'm a new user of bioconductor and I'm starting to work with rsbml > package. The problem is that this package only recognizes currently > level=2, > version=1, so I'm sending this message if there is any possibility to > import > to R SBML files with higher versions. > > Pj > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
ADD COMMENT
0
Entering edit mode
You are right, I have mistaken with Cytoscape SBML import capabilities, but in fact my problem is with a SBML file level=2, version=4 ( http://www.comp-sys-bio.org/yeastnet/) (that’s why I couldn’t import it to rsbml). Hope next augmentation of rsbml SBML import capability will occur soon, so this package can cope and communicate with other developing software. Pj You are right, I mistaked with Cytoscape SBML import capabilities, but in fact my problem is with a SBML level=2, version=4 (). Hope next import rsbml SBML capabilities will be increased soon, it would be handy. Pj 2010/10/27 Michael Lawrence <lawrence.michael@gene.com> > It should support up to level=2, version=3. If you see something documented > to the contrary, please let me know. It's true that it does not support > level=3, but there's only so much time in a day. > > Thanks, > Michael > > > On Wed, Oct 27, 2010 at 3:25 AM, pj dias <pjdias87@gmail.com> wrote: > >> Hi, I'm a new user of bioconductor and I'm starting to work with rsbml >> package. The problem is that this package only recognizes currently >> level=2, >> version=1, so I'm sending this message if there is any possibility to >> import >> to R SBML files with higher versions. >> >> Pj >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor@stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > [[alternative HTML version deleted]]
ADD REPLY

Login before adding your answer.

Traffic: 676 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6