Fwd: how to plot corr between two tissues/dendrograms
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@sean-davis-490
Last seen 4 months ago
United States
---------- Forwarded message ---------- From: abosco@email.arizona.edu <abosco@email.arizona.edu> Date: Tue, Nov 2, 2010 at 9:28 PM Subject: Re: [BioC] how to plot corr between two tissues/dendrograms To: "Davis, Sean (NIH/NCI) [E]" <sdavis2 at="" mail.nih.gov=""> Hi Sean, Thanks for your email. I have attached the figure in PDF.. To clarify, each cluster dendrogram represents the gene coexpression pattern within each tissue, and the blue links represent gene-gene correlations between tissues (ie similar idea to Dobrin et al. Genome Biol. 2009;10(5):R55. Epub 2009 May 22). The idea is to construct gene coexpression modules for each tissue independently, then quantify molecular interactions between the two tissues. Best regards, Anthony Bosco Quoting Sean Davis <sdavis2 at="" mail.nih.gov="">: > On Mon, Nov 1, 2010 at 7:35 PM, <abosco at="" email.arizona.edu=""> wrote: > >> Dear list, >> >> >> I have some microarray data in which gene expression was profiled in two >> different tissues, collected at the same time from the same subjects. >> >> I would like to use hierarchical clustering initially to cluster the gene >> expression patterns separately for each tissue. >> >> Then I would like to correlate gene expression traits between the two >> tissues, >> and plot the two cluster dendrograms together with links representing the >> between tissue correlations of the clustered genes in a single plot (see >> hypothetical example in the attached powerpoint slide). >> >> The problem is that I do not know how to go about plotting this in R. >> >> Can anyone please point me in the right direction? >> >> > Hi, Anthony. Powerpoint get's scrubbed, I think. You may have to put up a > link to the slide. I have to admit, I'm not clear on what you want to do. > > Sean -------------- next part -------------- A non-text attachment was scrubbed... Name: Figure.pdf Type: application/pdf Size: 149959 bytes Desc: not available URL: <https: stat.ethz.ch="" pipermail="" bioconductor="" attachments="" 20101102="" d90bd254="" attachment.pdf="">
Microarray GO Clustering Microarray GO Clustering • 1.8k views
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Thomas Girke ★ 1.7k
@thomas-girke-993
Last seen 9 months ago
United States
The phylogenetics package ape on CRAN has a variety of tree plottings facilities that come close to what you are looking for: http://cran.at.r-project.org/web/packages/ape/index.html For instance, take a look at the last image on their screenshot site: http://ape.mpl.ird.fr/ape_screenshots.html In general, ape is a very nice resource for customizing trees for gene expression, phylogenic or many other use cases. Thomas On Tue, Nov 02, 2010 at 09:38:25PM -0400, Sean Davis wrote: > ---------- Forwarded message ---------- > From: abosco at email.arizona.edu <abosco at="" email.arizona.edu=""> > Date: Tue, Nov 2, 2010 at 9:28 PM > Subject: Re: [BioC] how to plot corr between two tissues/dendrograms > To: "Davis, Sean (NIH/NCI) [E]" <sdavis2 at="" mail.nih.gov=""> > > > Hi Sean, > > > Thanks for your email. > > I have attached the figure in PDF.. > > To clarify, each cluster dendrogram represents the gene coexpression pattern > within each tissue, and the blue links represent gene-gene correlations > between > tissues (ie similar idea to Dobrin et al. Genome Biol. 2009;10(5):R55. > Epub 2009 > May 22). > > The idea is to construct gene coexpression modules for each tissue > independently, then quantify molecular interactions between the two tissues. > > > Best regards, > > > Anthony Bosco > > > > Quoting Sean Davis <sdavis2 at="" mail.nih.gov="">: > > > On Mon, Nov 1, 2010 at 7:35 PM, <abosco at="" email.arizona.edu=""> wrote: > > > >> Dear list, > >> > >> > >> I have some microarray data in which gene expression was profiled in two > >> different tissues, collected at the same time from the same subjects. > >> > >> I would like to use hierarchical clustering initially to cluster the gene > >> expression patterns separately for each tissue. > >> > >> Then I would like to correlate gene expression traits between the two > >> tissues, > >> and plot the two cluster dendrograms together with links representing the > >> between tissue correlations of the clustered genes in a single plot (see > >> hypothetical example in the attached powerpoint slide). > >> > >> The problem is that I do not know how to go about plotting this in R. > >> > >> Can anyone please point me in the right direction? > >> > >> > > Hi, Anthony. Powerpoint get's scrubbed, I think. You may have to put up > a > > link to the slide. I have to admit, I'm not clear on what you want to do. > > > > Sean > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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Hi Thomas, you are correct...thats right...last image is like Sean sent me in PDF...fantastic. I will explore more ape resource.. thank you so much, Saurin --- On Wed, 11/3/10, Thomas Girke <thomas.girke at="" ucr.edu=""> wrote: > From: Thomas Girke <thomas.girke at="" ucr.edu=""> > Subject: Re: [BioC] Fwd: how to plot corr between two tissues/dendrograms > To: "Sean Davis" <sdavis2 at="" mail.nih.gov=""> > Cc: abosco at email.arizona.edu, "Bioconductor Newsgroup" <bioconductor at="" stat.math.ethz.ch=""> > Date: Wednesday, November 3, 2010, 1:35 PM > The phylogenetics package ape on CRAN > has a variety of tree plottings facilities > that come close to what you are looking for: > http://cran.at.r-project.org/web/packages/ape/index.html > > For instance, take a look at the last image on their > screenshot site: > http://ape.mpl.ird.fr/ape_screenshots.html > > In general, ape is a very nice resource for customizing > trees for gene > expression, phylogenic or many other use cases. > > Thomas > > > On Tue, Nov 02, 2010 at 09:38:25PM -0400, Sean Davis > wrote: > > ---------- Forwarded message ---------- > > From: abosco at email.arizona.edu > <abosco at="" email.arizona.edu=""> > > Date: Tue, Nov 2, 2010 at 9:28 PM > > Subject: Re: [BioC] how to plot corr between two > tissues/dendrograms > > To: "Davis, Sean (NIH/NCI) [E]" <sdavis2 at="" mail.nih.gov=""> > > > > > > Hi Sean, > > > > > > Thanks for your email. > > > > I have attached the figure in PDF.. > > > > To clarify, each cluster dendrogram represents the > gene coexpression pattern > > within each tissue, and the blue links represent > gene-gene correlations > > between > > tissues (ie similar idea to Dobrin et al. Genome Biol. > 2009;10(5):R55. > > Epub 2009 > > May 22). > > > > The idea is to construct gene coexpression modules for > each tissue > > independently, then quantify molecular interactions > between the two tissues. > > > > > > Best regards, > > > > > > Anthony Bosco > > > > > > > > Quoting Sean Davis <sdavis2 at="" mail.nih.gov="">: > > > > > On Mon, Nov 1, 2010 at 7:35 PM, <abosco at="" email.arizona.edu=""> > wrote: > > > > > >> Dear list, > > >> > > >> > > >> I have some microarray data in which gene > expression was profiled in two > > >> different tissues, collected at the same time > from the same subjects. > > >> > > >> I would like to use hierarchical clustering > initially to cluster the gene > > >> expression patterns separately for each > tissue. > > >> > > >> Then I would like to correlate gene > expression traits between the two > > >> tissues, > > >> and plot the two cluster dendrograms together > with links representing the > > >> between tissue correlations of the clustered > genes in a single plot (see > > >> hypothetical example in the attached > powerpoint slide). > > >> > > >> The problem is that I do not know how to go > about plotting this in R. > > >> > > >> Can anyone please point me in the right > direction? > > >> > > >> > > > Hi, Anthony.? Powerpoint get's scrubbed, I > think.? You may have to put up > > a > > > link to the slide.? I have to admit, I'm not > clear on what you want to do. > > > > > > Sean > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor at stat.math.ethz.ch > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
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SAURIN ★ 1.1k
@saurin-799
Last seen 10.3 years ago
Hi Sean, thanks for your email and PDF ..that looks fantastic..The Image with Heatmap...of two tissues...That exactly I am looking for..!! In my case..two tissues..I have one Normalized set of TWO classes Control and Experimental..will that work? Do you have R code for that or should I ask author for this? Thank you so much, Saurin --- On Tue, 11/2/10, Sean Davis <sdavis2 at="" mail.nih.gov=""> wrote: > From: Sean Davis <sdavis2 at="" mail.nih.gov=""> > Subject: [BioC] Fwd: how to plot corr between two tissues/dendrograms > To: abosco at email.arizona.edu > Cc: "Bioconductor Newsgroup" <bioconductor at="" stat.math.ethz.ch=""> > Date: Tuesday, November 2, 2010, 9:38 PM > ---------- Forwarded message > ---------- > From: abosco at email.arizona.edu > <abosco at="" email.arizona.edu=""> > Date: Tue, Nov 2, 2010 at 9:28 PM > Subject: Re: [BioC] how to plot corr between two > tissues/dendrograms > To: "Davis, Sean (NIH/NCI) [E]" <sdavis2 at="" mail.nih.gov=""> > > > Hi Sean, > > > Thanks for your email. > > I have attached the figure in PDF.. > > To clarify, each cluster dendrogram represents the gene > coexpression pattern > within each tissue, and the blue links represent gene-gene > correlations > between > tissues (ie similar idea to Dobrin et al. Genome Biol. > 2009;10(5):R55. > Epub 2009 > May 22). > > The idea is to construct gene coexpression modules for each > tissue > independently, then quantify molecular interactions between > the two tissues. > > > Best regards, > > > Anthony Bosco > > > > Quoting Sean Davis <sdavis2 at="" mail.nih.gov="">: > > > On Mon, Nov 1, 2010 at 7:35 PM, <abosco at="" email.arizona.edu=""> > wrote: > > > >> Dear list, > >> > >> > >> I have some microarray data in which gene > expression was profiled in two > >> different tissues, collected at the same time from > the same subjects. > >> > >> I would like to use hierarchical clustering > initially to cluster the gene > >> expression patterns separately for each tissue. > >> > >> Then I would like to correlate gene expression > traits between the two > >> tissues, > >> and plot the two cluster dendrograms together with > links representing the > >> between tissue correlations of the clustered genes > in a single plot (see > >> hypothetical example in the attached powerpoint > slide). > >> > >> The problem is that I do not know how to go about > plotting this in R. > >> > >> Can anyone please point me in the right > direction? > >> > >> > > Hi, Anthony.? Powerpoint get's scrubbed, I > think.? You may have to put up > a > > link to the slide.? I have to admit, I'm not > clear on what you want to do. > > > > Sean > > -----Inline Attachment Follows----- > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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On Wed, Nov 3, 2010 at 2:26 PM, Saurin D. Jani <saurin_jani@yahoo.com>wrote: > Hi Sean, > > thanks for your email and PDF ..that looks fantastic..The Image with > Heatmap...of two tissues...That exactly I am looking for..!! > > In my case..two tissues..I have one Normalized set of TWO classes Control > and Experimental..will that work? > > Do you have R code for that or should I ask author for this? > > There is no R code. This thread began by a user asking for a way to create that PDF. Thomas Girke just replied that there might be a similar functionality in the ape package. Sean > Thank you so much, > Saurin > > > > --- On Tue, 11/2/10, Sean Davis <sdavis2@mail.nih.gov> wrote: > > > From: Sean Davis <sdavis2@mail.nih.gov> > > Subject: [BioC] Fwd: how to plot corr between two tissues/dendrograms > > To: abosco@email.arizona.edu > > Cc: "Bioconductor Newsgroup" <bioconductor@stat.math.ethz.ch> > > Date: Tuesday, November 2, 2010, 9:38 PM > > ---------- Forwarded message > > ---------- > > From: abosco@email.arizona.edu > > <abosco@email.arizona.edu> > > Date: Tue, Nov 2, 2010 at 9:28 PM > > Subject: Re: [BioC] how to plot corr between two > > tissues/dendrograms > > To: "Davis, Sean (NIH/NCI) [E]" <sdavis2@mail.nih.gov> > > > > > > Hi Sean, > > > > > > Thanks for your email. > > > > I have attached the figure in PDF.. > > > > To clarify, each cluster dendrogram represents the gene > > coexpression pattern > > within each tissue, and the blue links represent gene-gene > > correlations > > between > > tissues (ie similar idea to Dobrin et al. Genome Biol. > > 2009;10(5):R55. > > Epub 2009 > > May 22). > > > > The idea is to construct gene coexpression modules for each > > tissue > > independently, then quantify molecular interactions between > > the two tissues. > > > > > > Best regards, > > > > > > Anthony Bosco > > > > > > > > Quoting Sean Davis <sdavis2@mail.nih.gov>: > > > > > On Mon, Nov 1, 2010 at 7:35 PM, <abosco@email.arizona.edu> > > wrote: > > > > > >> Dear list, > > >> > > >> > > >> I have some microarray data in which gene > > expression was profiled in two > > >> different tissues, collected at the same time from > > the same subjects. > > >> > > >> I would like to use hierarchical clustering > > initially to cluster the gene > > >> expression patterns separately for each tissue. > > >> > > >> Then I would like to correlate gene expression > > traits between the two > > >> tissues, > > >> and plot the two cluster dendrograms together with > > links representing the > > >> between tissue correlations of the clustered genes > > in a single plot (see > > >> hypothetical example in the attached powerpoint > > slide). > > >> > > >> The problem is that I do not know how to go about > > plotting this in R. > > >> > > >> Can anyone please point me in the right > > direction? > > >> > > >> > > > Hi, Anthony. Powerpoint get's scrubbed, I > > think. You may have to put up > > a > > > link to the slide. I have to admit, I'm not > > clear on what you want to do. > > > > > > Sean > > > > -----Inline Attachment Follows----- > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor@stat.math.ethz.ch > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > [[alternative HTML version deleted]]
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The R code for co-plotting two trees with association lines is: library(ape) #two random trees tree1<-rtree(40) #random tree with 40 leaves tree2<-rtree(20) #random tree with 20 leaves #creation of the association matrix association<-matrix(ncol=2, nrow=40) association[,1]<-association[,2]<-tree2$tip.label # standard plot cophyloplot(tree1, tree2, assoc=association, length.line=4, space=28, gap=3) # interactive plot with rotations cophyloplot(tree1, tree2, assoc=association, length.line=4, space=28, gap=3, rotate=TRUE) Thomas On Wed, Nov 03, 2010 at 02:33:17PM -0400, Sean Davis wrote: > On Wed, Nov 3, 2010 at 2:26 PM, Saurin D. Jani <saurin_jani at="" yahoo.com="">wrote: > > > Hi Sean, > > > > thanks for your email and PDF ..that looks fantastic..The Image with > > Heatmap...of two tissues...That exactly I am looking for..!! > > > > In my case..two tissues..I have one Normalized set of TWO classes Control > > and Experimental..will that work? > > > > Do you have R code for that or should I ask author for this? > > > > > There is no R code. This thread began by a user asking for a way to create > that PDF. Thomas Girke just replied that there might be a similar > functionality in the ape package. > > Sean > > > > > Thank you so much, > > Saurin > > > > > > > > --- On Tue, 11/2/10, Sean Davis <sdavis2 at="" mail.nih.gov=""> wrote: > > > > > From: Sean Davis <sdavis2 at="" mail.nih.gov=""> > > > Subject: [BioC] Fwd: how to plot corr between two tissues/dendrograms > > > To: abosco at email.arizona.edu > > > Cc: "Bioconductor Newsgroup" <bioconductor at="" stat.math.ethz.ch=""> > > > Date: Tuesday, November 2, 2010, 9:38 PM > > > ---------- Forwarded message > > > ---------- > > > From: abosco at email.arizona.edu > > > <abosco at="" email.arizona.edu=""> > > > Date: Tue, Nov 2, 2010 at 9:28 PM > > > Subject: Re: [BioC] how to plot corr between two > > > tissues/dendrograms > > > To: "Davis, Sean (NIH/NCI) [E]" <sdavis2 at="" mail.nih.gov=""> > > > > > > > > > Hi Sean, > > > > > > > > > Thanks for your email. > > > > > > I have attached the figure in PDF.. > > > > > > To clarify, each cluster dendrogram represents the gene > > > coexpression pattern > > > within each tissue, and the blue links represent gene-gene > > > correlations > > > between > > > tissues (ie similar idea to Dobrin et al. Genome Biol. > > > 2009;10(5):R55. > > > Epub 2009 > > > May 22). > > > > > > The idea is to construct gene coexpression modules for each > > > tissue > > > independently, then quantify molecular interactions between > > > the two tissues. > > > > > > > > > Best regards, > > > > > > > > > Anthony Bosco > > > > > > > > > > > > Quoting Sean Davis <sdavis2 at="" mail.nih.gov="">: > > > > > > > On Mon, Nov 1, 2010 at 7:35 PM, <abosco at="" email.arizona.edu=""> > > > wrote: > > > > > > > >> Dear list, > > > >> > > > >> > > > >> I have some microarray data in which gene > > > expression was profiled in two > > > >> different tissues, collected at the same time from > > > the same subjects. > > > >> > > > >> I would like to use hierarchical clustering > > > initially to cluster the gene > > > >> expression patterns separately for each tissue. > > > >> > > > >> Then I would like to correlate gene expression > > > traits between the two > > > >> tissues, > > > >> and plot the two cluster dendrograms together with > > > links representing the > > > >> between tissue correlations of the clustered genes > > > in a single plot (see > > > >> hypothetical example in the attached powerpoint > > > slide). > > > >> > > > >> The problem is that I do not know how to go about > > > plotting this in R. > > > >> > > > >> Can anyone please point me in the right > > > direction? > > > >> > > > >> > > > > Hi, Anthony. Powerpoint get's scrubbed, I > > > think. You may have to put up > > > a > > > > link to the slide. I have to admit, I'm not > > > clear on what you want to do. > > > > > > > > Sean > > > > > > -----Inline Attachment Follows----- > > > > > > _______________________________________________ > > > Bioconductor mailing list > > > Bioconductor at stat.math.ethz.ch > > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > > Search the archives: > > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > > > > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
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Hi Thomas, thank you so much..That ape code helps a lot. I really appreciate that. Thanks, Saurin --- On Wed, 11/3/10, Thomas Girke <thomas.girke at="" ucr.edu=""> wrote: > From: Thomas Girke <thomas.girke at="" ucr.edu=""> > Subject: Re: [BioC] Fwd: how to plot corr between two tissues/dendrograms > To: "Sean Davis" <sdavis2 at="" mail.nih.gov=""> > Cc: "saurin_jani at yahoo.com" <saurin_jani at="" yahoo.com="">, "abosco at email.arizona.edu" <abosco at="" email.arizona.edu="">, "Bioconductor Newsgroup" <bioconductor at="" stat.math.ethz.ch=""> > Date: Wednesday, November 3, 2010, 2:51 PM > The R code for co-plotting two trees > with association lines is: > > library(ape) > #two random trees > tree1<-rtree(40) #random tree with 40 leaves > tree2<-rtree(20) #random tree with 20 leaves > > #creation of the association matrix > association<-matrix(ncol=2, nrow=40) > association[,1]<-association[,2]<-tree2$tip.label > > # standard plot > cophyloplot(tree1, tree2, assoc=association, length.line=4, > space=28, gap=3) > > # interactive plot with rotations > cophyloplot(tree1, tree2, assoc=association, length.line=4, > space=28, gap=3, rotate=TRUE) > > Thomas > > On Wed, Nov 03, 2010 at 02:33:17PM -0400, Sean Davis > wrote: > > On Wed, Nov 3, 2010 at 2:26 PM, Saurin D. Jani <saurin_jani at="" yahoo.com="">wrote: > > > > > Hi Sean, > > > > > > thanks for your email and PDF ..that looks > fantastic..The Image with > > > Heatmap...of two tissues...That exactly I am > looking for..!! > > > > > > In my case..two tissues..I have one Normalized > set of TWO classes Control > > > and Experimental..will that work? > > > > > > Do you have R code for that or should I ask > author for this? > > > > > > > > There is no R code.? This thread began by a user > asking for a way to create > > that PDF.? Thomas Girke just replied that there > might be a similar > > functionality in the ape package. > > > > Sean > > > > > > > > > Thank you so much, > > > Saurin > > > > > > > > > > > > --- On Tue, 11/2/10, Sean Davis <sdavis2 at="" mail.nih.gov=""> > wrote: > > > > > > > From: Sean Davis <sdavis2 at="" mail.nih.gov=""> > > > > Subject: [BioC] Fwd:? how to plot corr > between two tissues/dendrograms > > > > To: abosco at email.arizona.edu > > > > Cc: "Bioconductor Newsgroup" <bioconductor at="" stat.math.ethz.ch=""> > > > > Date: Tuesday, November 2, 2010, 9:38 PM > > > > ---------- Forwarded message > > > > ---------- > > > > From: abosco at email.arizona.edu > > > > <abosco at="" email.arizona.edu=""> > > > > Date: Tue, Nov 2, 2010 at 9:28 PM > > > > Subject: Re: [BioC] how to plot corr between > two > > > > tissues/dendrograms > > > > To: "Davis, Sean (NIH/NCI) [E]" <sdavis2 at="" mail.nih.gov=""> > > > > > > > > > > > > Hi Sean, > > > > > > > > > > > > Thanks for your email. > > > > > > > > I have attached the figure in PDF.. > > > > > > > > To clarify, each cluster dendrogram > represents the gene > > > > coexpression pattern > > > > within each tissue, and the blue links > represent gene-gene > > > > correlations > > > > between > > > > tissues (ie similar idea to Dobrin et al. > Genome Biol. > > > > 2009;10(5):R55. > > > > Epub 2009 > > > > May 22). > > > > > > > > The idea is to construct gene coexpression > modules for each > > > > tissue > > > > independently, then quantify molecular > interactions between > > > > the two tissues. > > > > > > > > > > > > Best regards, > > > > > > > > > > > > Anthony Bosco > > > > > > > > > > > > > > > > Quoting Sean Davis <sdavis2 at="" mail.nih.gov="">: > > > > > > > > > On Mon, Nov 1, 2010 at 7:35 PM, <abosco at="" email.arizona.edu=""> > > > > wrote: > > > > > > > > > >> Dear list, > > > > >> > > > > >> > > > > >> I have some microarray data in > which gene > > > > expression was profiled in two > > > > >> different tissues, collected at the > same time from > > > > the same subjects. > > > > >> > > > > >> I would like to use hierarchical > clustering > > > > initially to cluster the gene > > > > >> expression patterns separately for > each tissue. > > > > >> > > > > >> Then I would like to correlate gene > expression > > > > traits between the two > > > > >> tissues, > > > > >> and plot the two cluster > dendrograms together with > > > > links representing the > > > > >> between tissue correlations of the > clustered genes > > > > in a single plot (see > > > > >> hypothetical example in the > attached powerpoint > > > > slide). > > > > >> > > > > >> The problem is that I do not know > how to go about > > > > plotting this in R. > > > > >> > > > > >> Can anyone please point me in the > right > > > > direction? > > > > >> > > > > >> > > > > > Hi, Anthony.? Powerpoint get's > scrubbed, I > > > > think.? You may have to put up > > > > a > > > > > link to the slide.? I have to > admit, I'm not > > > > clear on what you want to do. > > > > > > > > > > Sean > > > > > > > > -----Inline Attachment Follows----- > > > > > > > > > _______________________________________________ > > > > Bioconductor mailing list > > > > Bioconductor at stat.math.ethz.ch > > > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > > > Search the archives: > > > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > > > > > > > > > > > > > ??? [[alternative HTML version > deleted]] > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor at stat.math.ethz.ch > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > > >
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