Entering edit mode
http://cran.r-project.org/web/packages/pheatmap/index.html
cheers
iain
--- On Thu, 16/12/10, Saurin D. Jani <saurin_jani at="" yahoo.com=""> wrote:
> From: Saurin D. Jani <saurin_jani at="" yahoo.com="">
> Subject: pheatmap function is in Which package? - help
> To: "Iain Gallagher" <iaingallagher at="" btopenworld.com="">
> Date: Thursday, 16 December, 2010, 18:49
> Hi Iain,
>
> could you please let me know which package I need to
> download for that?
>
> Thank you,
> Saurin
>
> --- On Thu, 12/16/10, Iain Gallagher <iaingallagher at="" btopenworld.com="">
> wrote:
>
> > From: Iain Gallagher <iaingallagher at="" btopenworld.com="">
> > Subject: Re: [BioC] consistant Heatmap image based on
> number of genes and size of samples? - help
> > To: saurin_jani at yahoo.com
> > Cc: "bioconductor" <bioconductor at="" stat.math.ethz.ch="">
> > Date: Thursday, December 16, 2010, 1:10 PM
> > Hi Saurin
> >
> > You could try the pheatmap function / lib. It tries to
> pick
> > sensible defaults for heatmaps.
> >
> > best
> >
> > i
> >
> > --- On Thu, 16/12/10, Saurin D. Jani <saurin_jani at="" yahoo.com="">
> > wrote:
> >
> > > From: Saurin D. Jani <saurin_jani at="" yahoo.com="">
> > > Subject: [BioC] consistant Heatmap image based
> on
> > number of genes and size of samples? - help
> > > To: "Bioconductor Bioconductor" <bioconductor at="" stat.math.ethz.ch="">
> > > Date: Thursday, 16 December, 2010, 14:16
> > > Hi BioC,
> > >
> > > is there any function/parameter settings in
> R/BioC
> > which
> > > adjusts the Heatmap image based on sample size
> and
> > number of
> > > genes which needs to be plotted on image.
> > >
> > > The problem is when I generate Heatmap with :
> > >
> > > bitmap(file = Hfile, type = "png16m", height =
> MapH,
> > width
> > > = MapW, res = 72, units = "px",pointsize = 16);
> > >
> > > where Hfile, MapH and MapW are variables I use
> to
> > generate
> > > heatmap image file. (PNG)
> > >
> > >
> > >
> > > if samples are 500 and genes are 300 .... it
> works
> > with
> > > certain margin , height, width but if I do.. 500
> > samples and
> > > 4 genes only..the size are too big..I mean its
> obvious
> > there
> > > are less num. of genes to plot..but is there any
> > parameter
> > > settings which will adjust image size?
> > >
> > >
> > > Thank you so much in advance,
> > > Saurin
> > >
> > > _______________________________________________
> > > Bioconductor mailing list
> > > Bioconductor at r-project.org
> > > https://stat.ethz.ch/mailman/listinfo/bioconductor
> > > Search the archives:
http://news.gmane.org/gmane.science.biology.informatics.conductor
> > >
> >
>
>
> ? ? ?
>
