Thanks. I will try it. Jian-Feng, 2011/2/7 Vincent Carey <stvjc at="" channing.harvard.edu="">: > get a sysadmin to do something like > > sudo yum install glib > > and try again > > you are missing basic development infrastructure on your linux machine > > On Mon, Feb 7, 2011 at 2:59 AM, Mao Jianfeng <jianfeng.mao at="" gmail.com=""> wrote: >> Dear listers, >> >> I am facing problem of installing Ruuid package in a linux server. >> Please give some helps. >> >> Thanks in advance. >> >> Jian-Feng, >> >> >> #################(1) install Ruuid package from >> binary########################################### >>> source("http://bioconductor.org/biocLite.R") >> BioC_mirror = http://www.bioconductor.org >> Change using chooseBioCmirror(). >>> biocLite('Ruuid') >> Using R version 2.12.0, biocinstall version 2.7.4. >> Installing Bioconductor version 2.7 packages: >> [1] "Ruuid" >> Please wait... >> >> Installing package(s) into ?/ebio/abt6/jmao/rpacks? >> (as ?lib? is unspecified) >> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/src/contr ib/Ruuid_1.28.0.tar.gz' >> Content type 'application/x-gzip' length 71906 bytes (70 Kb) >> opened URL >> ================================================== >> downloaded 70 Kb >> >> * installing *source* package ?Ruuid? ... >> checking for pkg-config... /usr/bin/pkg-config >> checking for glib-config... no >> checking for glib-2.0... configure: error: No glib package information found >> ERROR: configuration failed for package ?Ruuid? >> * removing ?/ebio/abt6/jmao/rpacks/Ruuid? >> >> The downloaded packages are in >> ? ? ? ??/tmp/RtmpGQAHn2/downloaded_packages? >> Warning message: >> In install.packages(pkgs = pkgs, repos = repos, ...) : >> ?installation of package 'Ruuid' had non-zero exit status >>> library(Ruuid) >> Error in library(Ruuid) : there is no package called 'Ruuid' >> >> #####################(2) install Ruuid package from >> source####################################### >>> biocLite("Ruuid", type="source") >> Using R version 2.12.0, biocinstall version 2.7.4. >> Installing Bioconductor version 2.7 packages: >> [1] "Ruuid" >> Please wait... >> >> Installing package(s) into ?/ebio/abt6/jmao/rpacks? >> (as ?lib? is unspecified) >> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/src/contr ib/Ruuid_1.28.0.tar.gz' >> Content type 'application/x-gzip' length 71906 bytes (70 Kb) >> opened URL >> ================================================== >> downloaded 70 Kb >> >> * installing *source* package ?Ruuid? ... >> checking for pkg-config... /usr/bin/pkg-config >> checking for glib-config... no >> checking for glib-2.0... configure: error: No glib package information found >> ERROR: configuration failed for package ?Ruuid? >> * removing ?/ebio/abt6/jmao/rpacks/Ruuid? >> >> The downloaded packages are in >> ? ? ? ??/tmp/RtmpGQAHn2/downloaded_packages? >> Warning message: >> In install.packages(pkgs = pkgs, repos = repos, ...) : >> ?installation of package 'Ruuid' had non-zero exit status >> >> >> >> #######################(1) my version and >> sessionInfo()##################################### >>> version >> ? ? ? ? ? ? ? _ >> platform ? ? ? x86_64-unknown-linux-gnu >> arch ? ? ? ? ? x86_64 >> os ? ? ? ? ? ? linux-gnu >> system ? ? ? ? x86_64, linux-gnu >> status >> major ? ? ? ? ?2 >> minor ? ? ? ? ?12.0 >> year ? ? ? ? ? 2010 >> month ? ? ? ? ?10 >> day ? ? ? ? ? ?15 >> svn rev ? ? ? ?53317 >> language ? ? ? R >> version.string R version 2.12.0 (2010-10-15) >>> sessionInfo() >> R version 2.12.0 (2010-10-15) >> Platform: x86_64-unknown-linux-gnu (64-bit) >> >> locale: >> ?[1] LC_CTYPE=en_US.UTF-8 ? ? ? LC_NUMERIC=C >> ?[3] LC_TIME=en_US.UTF-8 ? ? ? ?LC_COLLATE=en_US.UTF-8 >> ?[5] LC_MONETARY=C ? ? ? ? ? ? ?LC_MESSAGES=en_US.UTF-8 >> ?[7] LC_PAPER=en_US.UTF-8 ? ? ? LC_NAME=C >> ?[9] LC_ADDRESS=C ? ? ? ? ? ? ? LC_TELEPHONE=C >> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C >> >> attached base packages: >> [1] stats ? ? graphics ?grDevices utils ? ? datasets ?methods ? base >> >> loaded via a namespace (and not attached): >> [1] tools_2.12.0 >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >> > -- Jian-Feng, Mao the Institute of Botany, Chinese Academy of Botany,

Dear Vincent, It got done following your advice, by installation of the library in linux server before installation of Ruuid and GGtools packages. Thanks a lot. Jian-Feng, Mao 2011/2/7 Vincent Carey <stvjc at="" channing.harvard.edu="">: > get a sysadmin to do something like > > sudo yum install glib > > and try again > > you are missing basic development infrastructure on your linux machine > > On Mon, Feb 7, 2011 at 2:59 AM, Mao Jianfeng <jianfeng.mao at="" gmail.com=""> wrote: >> Dear listers, >> >> I am facing problem of installing Ruuid package in a linux server. >> Please give some helps. >> >> Thanks in advance. >> >> Jian-Feng, >> >> >> #################(1) install Ruuid package from >> binary########################################### >>> source("http://bioconductor.org/biocLite.R") >> BioC_mirror = http://www.bioconductor.org >> Change using chooseBioCmirror(). >>> biocLite('Ruuid') >> Using R version 2.12.0, biocinstall version 2.7.4. >> Installing Bioconductor version 2.7 packages: >> [1] "Ruuid" >> Please wait... >> >> Installing package(s) into ?/ebio/abt6/jmao/rpacks? >> (as ?lib? is unspecified) >> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/src/contr ib/Ruuid_1.28.0.tar.gz' >> Content type 'application/x-gzip' length 71906 bytes (70 Kb) >> opened URL >> ================================================== >> downloaded 70 Kb >> >> * installing *source* package ?Ruuid? ... >> checking for pkg-config... /usr/bin/pkg-config >> checking for glib-config... no >> checking for glib-2.0... configure: error: No glib package information found >> ERROR: configuration failed for package ?Ruuid? >> * removing ?/ebio/abt6/jmao/rpacks/Ruuid? >> >> The downloaded packages are in >> ? ? ? ??/tmp/RtmpGQAHn2/downloaded_packages? >> Warning message: >> In install.packages(pkgs = pkgs, repos = repos, ...) : >> ?installation of package 'Ruuid' had non-zero exit status >>> library(Ruuid) >> Error in library(Ruuid) : there is no package called 'Ruuid' >> >> #####################(2) install Ruuid package from >> source####################################### >>> biocLite("Ruuid", type="source") >> Using R version 2.12.0, biocinstall version 2.7.4. >> Installing Bioconductor version 2.7 packages: >> [1] "Ruuid" >> Please wait... >> >> Installing package(s) into ?/ebio/abt6/jmao/rpacks? >> (as ?lib? is unspecified) >> trying URL 'http://www.bioconductor.org/packages/2.7/bioc/src/contr ib/Ruuid_1.28.0.tar.gz' >> Content type 'application/x-gzip' length 71906 bytes (70 Kb) >> opened URL >> ================================================== >> downloaded 70 Kb >> >> * installing *source* package ?Ruuid? ... >> checking for pkg-config... /usr/bin/pkg-config >> checking for glib-config... no >> checking for glib-2.0... configure: error: No glib package information found >> ERROR: configuration failed for package ?Ruuid? >> * removing ?/ebio/abt6/jmao/rpacks/Ruuid? >> >> The downloaded packages are in >> ? ? ? ??/tmp/RtmpGQAHn2/downloaded_packages? >> Warning message: >> In install.packages(pkgs = pkgs, repos = repos, ...) : >> ?installation of package 'Ruuid' had non-zero exit status >> >> >> >> #######################(1) my version and >> sessionInfo()##################################### >>> version >> ? ? ? ? ? ? ? _ >> platform ? ? ? x86_64-unknown-linux-gnu >> arch ? ? ? ? ? x86_64 >> os ? ? ? ? ? ? linux-gnu >> system ? ? ? ? x86_64, linux-gnu >> status >> major ? ? ? ? ?2 >> minor ? ? ? ? ?12.0 >> year ? ? ? ? ? 2010 >> month ? ? ? ? ?10 >> day ? ? ? ? ? ?15 >> svn rev ? ? ? ?53317 >> language ? ? ? R >> version.string R version 2.12.0 (2010-10-15) >>> sessionInfo() >> R version 2.12.0 (2010-10-15) >> Platform: x86_64-unknown-linux-gnu (64-bit) >> >> locale: >> ?[1] LC_CTYPE=en_US.UTF-8 ? ? ? LC_NUMERIC=C >> ?[3] LC_TIME=en_US.UTF-8 ? ? ? ?LC_COLLATE=en_US.UTF-8 >> ?[5] LC_MONETARY=C ? ? ? ? ? ? ?LC_MESSAGES=en_US.UTF-8 >> ?[7] LC_PAPER=en_US.UTF-8 ? ? ? LC_NAME=C >> ?[9] LC_ADDRESS=C ? ? ? ? ? ? ? LC_TELEPHONE=C >> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C >> >> attached base packages: >> [1] stats ? ? graphics ?grDevices utils ? ? datasets ?methods ? base >> >> loaded via a namespace (and not attached): >> [1] tools_2.12.0 >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >> >