Hi, Does anybody know which package can be used to parse NCBI HomoloGene XML data file to get orthologs? thanks! Dong [[alternative HTML version deleted]]

Hi, Does anybody know which package can be used to parse NCBI HomoloGene XML data file to get orthologs? thanks! Dong [[alternative HTML version deleted]]

On 02/16/2011 04:54 PM, dong he wrote: > Hi, > > Does anybody know which package can be used to parse NCBI HomoloGene XML > data file to get orthologs? > Hi Dong If you are just interested in getting the orthologs, it is probably sufficient to look at the 'homologene.data' file, which is a simple tab delimited file: ftp://ftp.ncbi.nih.gov/pub/HomoloGene/current/homologene.data Regards, Hans > thanks! > > Dong > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor